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Report for CCDS3907.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3907.2 Public Homo sapiens 5 DNAJC21 24 110 108 CCDS HistoryNCBI Gene:134218Re-query CCDS DB by CCDS ID:3907.2Re-query CCDS DB by GeneID:134218See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 3907.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382021.2 ENSP00000371451.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382021.2Link to Ensembl Protein Viewer:ENSP00000371451.2Re-query CCDS DB by Nucleotide ID:ENST00000382021Re-query CCDS DB by Protein ID:ENSP00000371451
Original member Current member NCBI NM_194283.4 NP_919259.3 Accepted alive Link to Nucleotide Sequence:NM_194283.4Link to Protein Sequence:NP_919259.3Re-query CCDS DB by Nucleotide ID:NM_194283Re-query CCDS DB by Protein ID:NP_919259Link to BLAST:NP_919259.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919259.3 576 Q5F1R6-2 576 100% 0 0

Chromosomal Locations for CCDS 3907.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34929820 34929916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34933815 34933908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34935710 34935833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34936144 34936266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34937326 34937630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34938858 34939009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34941096 34941183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34944867 34945025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34945761 34945803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34949543 34949677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34950170 34950342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34953926 34954001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34954553 34954714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGAAGTGTCACTATGAGGCGCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGAAGGCCTATC
GGAAGCTGGCCCTGAAATGGCACCCGGATAAAAATCTGGATAATGCCGCAGAAGCAGCTGAACAATTTAA
ATTAATCCAAGCAGCATATGATGTGTTGAGTGACCCTCAGGAAAGAGCATGGTATGATAATCATAGAGAG
GCCCTACTTAAAGGTGGGTTTGATGGCGAATATCAAGATGACAGCTTAGATTTGCTACGCTATTTCACCG
TTACCTGTTATTCTGGTTATGGAGATGATGAAAAGGGATTTTACACGGTGTATCGTAATGTTTTTGAAAT
GATTGCCAAGGAAGAACTAGAATCTGTGTTAGAGGAAGAGGTTGATGATTTCCCAACTTTTGGAGACTCC
CAGAGTGACTATGATACGGTAGTCCATCCTTTCTACGCTTATTGGCAGAGTTTCTGCACTCAAAAGAATT
TTGCATGGAAGGAAGAATATGATACACGACAGGCTTCAAACCGCTGGGAAAAACGAGCCATGGAAAAAGA
AAACAAAAAGATTCGGGACAAAGCAAGGAAAGAGAAGAATGAGCTTGTCCGTCAGCTGGTAGCTTTCATT
CGTAAAAGAGATAAAAGAGTGCAGGCGCATCGAAAACTTGTGGAAGAACAGAATGCAGAGAAGGCGAGGA
AAGCCGAAGAGATGAGGCGGCAGCAGAAGCTAAAGCAGGCCAAACTGGTGGAGCAGTACAGAGAACAGAG
CTGGATGACTATGGCCAATTTGGAGAAAGAGCTCCAGGAGATGGAGGCACGGTACGAGAAGGAGTTTGGA
GATGGATCGGATGAAAATGAAATGGAAGAACATGAACTCAAAGATGAGGAGGATGGTAAAGACAGTGATG
AGGCCGAGGACGCTGAGCTCTATGATGACCTTTACTGCCCAGCATGTGACAAATCGTTCAAGACAGAAAA
GGCCATGAAGAATCACGAGAAGTCAAAGAAGCATCGGGAAATGGTGGCCTTGCTAAAACAACAGCTGGAG
GAGGAAGAAGAAAATTTTTCAAGACCTCAAATTGATGAAAATCCATTAGATGACAATTCTGAGGAAGAAA
TGGAAGATGCACCAAAACAAAAGCTTTCTAAAAAACAGAAGAAAAAGAAACAGAAACCAGCACAGGATGT
ACCTGGCAAAGATTCATATCTGCCTGCAGCTCACTTTCAGATGGCTTGGGGAAAAAAGTGTGTGTTGGGA
GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAATGTTGCTTGAAAACAGACAGAATTATGATG
ACAATTTCAATGTAAATGGACCTGGAGAAGGAGTAAAGGTTGATCCAGAAGATACTAACTTAAATCAAGA
CAGTGCCAAAGAATTGGAAGATAGTCCCCAGGAAAATGTCAGTGTCACAGAGATCATTAAACCATGTGAT
GATCCAAAAAGTGAAGCTAAAAGTGTTCCTAAACCCAAAGGAAAGAAAACCAAAGATATGAAAAAACCTG
TCAGAGTACCTGCTGAACCACAAACAATGAGTGTTCTTATCAGCTGTACAACCTGCCATAGTGAATTTCC
ATCTCGGAATAAACTTTTTGACCATCTAAAGGCCACAGGTCATGCAAGAGCACCTTCATCATCGTCTTTA
AACAGCGCAACAAGTAGTCAAAGCAAGAAAGAGAAACGTAAAAACAGATAG

Translation (576 aa):
MKCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWYDNHRE
ALLKGGFDGEYQDDSLDLLRYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELESVLEEEVDDFPTFGDS
QSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDTRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFI
RKRDKRVQAHRKLVEEQNAEKARKAEEMRRQQKLKQAKLVEQYREQSWMTMANLEKELQEMEARYEKEFG
DGSDENEMEEHELKDEEDGKDSDEAEDAELYDDLYCPACDKSFKTEKAMKNHEKSKKHREMVALLKQQLE
EEEENFSRPQIDENPLDDNSEEEMEDAPKQKLSKKQKKKKQKPAQDVPGKDSYLPAAHFQMAWGKKCVLG
ERRDGESEHKCAKMLLENRQNYDDNFNVNGPGEGVKVDPEDTNLNQDSAKELEDSPQENVSVTEIIKPCD
DPKSEAKSVPKPKGKKTKDMKKPVRVPAEPQTMSVLISCTTCHSEFPSRNKLFDHLKATGHARAPSSSSL
NSATSSQSKKEKRKNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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