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Report for CCDS38941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38941.1 Public Mus musculus 4 Agmat 23 108 98 CCDS HistoryNCBI Gene:75986Re-query CCDS DB by CCDS ID:38941.1Re-query CCDS DB by GeneID:75986See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038161.4 ENSMUSP00000040853.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038161.4Link to Ensembl Protein Viewer:ENSMUSP00000040853.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038161Re-query CCDS DB by Protein ID:ENSMUSP00000040853
Original member Current member NCBI NM_001081408.1 NP_001074877.1 Accepted alive Link to Nucleotide Sequence:NM_001081408.1Link to Protein Sequence:NP_001074877.1Re-query CCDS DB by Nucleotide ID:NM_001081408Re-query CCDS DB by Protein ID:NP_001074877Link to BLAST:NP_001074877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074877.1 358 A2AS89 358 100% 0 0

Chromosomal Locations for CCDS 38941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141746810 141747099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141749575 141749777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141754825 141754873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141755799 141755994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141757386 141757565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141758339 141758423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141758998 141759071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGCTGAGGCTGCTGAGGTCCAGCTGGGCCCGCGGCTTGGGGTCTGGGGTGGCCACTTGGCGTCCCTCAG
CGGGGCTCTTTCGTCCTGGGTGCCCTGGGATCCGCCAGGCTTCAGGTGCCTCAGATACCCCACACCACCA
GTCCCCCAGCTCTGAGTCACCGGTACAGCCGGTGGGGGTGGGTGTCTGTTCCATGATGCGCCTGCCCCTG
CAGTCCTCCCCCGAGGGGCTGGACGCTGCTTTCATCGGTGTGCCTCTGGATACTGGGACTTCCAACCGGC
CCGGGGCAAGATTTGGACCCTGTCGCATCCGGGAGGAGTCACTGATGCTGGGGGCTGTCAACCCCAGCAC
GGGAGCTCTCCCCTTCCAGTCCCTCAGGGTTGCAGACCTAGGCAATGTGAACGTCAATCTCTACAACCTC
CAGGACAGCTGCCTGCTGATTCGAGAGGCCTATCAGAATGTCCTCGCTGCGGGCTGCATTCCTCTGACCT
TGGGTGGAGACCAAACAATCACATATCCCATACTGCAAGCCGTGGCAAAGGAGCATGGCCCGGTGGGTTT
AGTGCATGTGGGTGCCCACACCAACACCACGGACAAACCTCGGGAGGAGAAGGTCTACCATCGGACACCT
TTCCGCCGAAGTGTGGATGAGGGACTGCTGGACAGCAAGCGAGTGGTACAGATAGGCATCCGGGGCTCCT
CCAGGACTCTGGATCCCTACAGATACAGTAGGAGCCAGGGCTTCCGTGTGGTCCTGGCTGAAGACTGTTG
GATGAAGTCACTGGTCCCCCTGATGGCAGAGGTCAGGCAGCAGATGGGGGGCAAGCCTCTTTATATCAGC
TTTGCCATAGATGCCTTGGATCCTGCCTATGCCCCAGGAACAGGGACACCGGAAATCGCGGGGCTCACCC
CTAGTCAGGCTCTGGAGATCATCCGGGGCTGCCAAGGCCTGAATGTGGTGGGCTGCGATCTTGTGGAAGT
CTCCCCGCCGTATGATCTCTCTGGTAACACAGCCCTCCTAGCAGCTAACCTGCTGTTTGAGATGCTGTGT
GCTCTCCCCAAAGTGACAACTGTCTGA

Translation (358 aa):
MLRLLRSSWARGLGSGVATWRPSAGLFRPGCPGIRQASGASDTPHHQSPSSESPVQPVGVGVCSMMRLPL
QSSPEGLDAAFIGVPLDTGTSNRPGARFGPCRIREESLMLGAVNPSTGALPFQSLRVADLGNVNVNLYNL
QDSCLLIREAYQNVLAAGCIPLTLGGDQTITYPILQAVAKEHGPVGLVHVGAHTNTTDKPREEKVYHRTP
FRRSVDEGLLDSKRVVQIGIRGSSRTLDPYRYSRSQGFRVVLAEDCWMKSLVPLMAEVRQQMGGKPLYIS
FAIDALDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVGCDLVEVSPPYDLSGNTALLAANLLFEMLC
ALPKVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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