NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38818.1 Public Mus musculus 4 Alg6 23 108 98 CCDS HistoryNCBI Gene:320438Re-query CCDS DB by CCDS ID:38818.1Re-query CCDS DB by GeneID:320438See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097961.8 ENSMUSP00000095574.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097961.8Link to Ensembl Protein Viewer:ENSMUSP00000095574.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097961Re-query CCDS DB by Protein ID:ENSMUSP00000095574
Original member Current member NCBI NM_001081264.1 NP_001074733.1 Accepted alive Link to Nucleotide Sequence:NM_001081264.1Link to Protein Sequence:NP_001074733.1Re-query CCDS DB by Nucleotide ID:NM_001081264Re-query CCDS DB by Protein ID:NP_001074733Link to BLAST:NP_001074733.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074733.1 507 Q3TAE8 507 100% 0 0

Chromosomal Locations for CCDS 38818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99719152 99719233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99726863 99726947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99738124 99738213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99739214 99739302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99741534 99741616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99742355 99742419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99743755 99743940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99744490 99744625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99746326 99746411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99748686 99748770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99750729 99750799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99752817 99752885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99752993 99753191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99761871 99762068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGAGAGCTGGCCGTGGATGGCAGTCGTGGTCTTACTAGGACTTACGGTGCGGTGGACGGTCTCTCTCA
GTTCCTACTCAGGTGCTGGAAAACCACCTATGTTTGGTGATTATGAAGCTCAGAGGCACTGGCAGGAAAT
TACCCTTAATTTACCAGTCAAACAGTGGTATTTTAACAGTAGTGATAACAATTTACTGTACTGGGGATTG
GATTACCCACCTCTTACGGCCTATCATAGCCTCTTATGTGCATATGTGGCAAAGTTTATAAACCCAGACT
GGGTTGCTCTCCACACATCACGAGGCTATGAGAGTCAGGCACACAAGCTCTTCATGCGTGCCACAGTTCT
TGCTGCTGATTTGCTCATTTACGTACCCGCGGTGCTTTTGTACTGTTACTCCTTAAAAGAAATCTCACCT
AAGAGAAAGATTGCTAGTGCGTTATGCATATTGCTGTATCCAGGTCTTATTCTTATCGACTATGGACATT
TTCAATATAATTCTGTGAGTCTTGGCTTTGCGTTGTGGGGTGTTCTTGGAGTATCTTGGGACTGGGACCT
GCTAGGGTCACTGGCATTTTGCTTAGCTCTAAATTATAAGCAGATGGAACTTTACCACTCCCTGCCATTT
TTTTGCTTTTTACTTGGCAAGTGTTTTAAAAAAGGCCTCAAAGGAAAGGGGCTTGCATTGTTCATTAGGA
TAGCCTGTACTGTCCTGGCTTCTTTCCTTCTGTGTTGGCTGCCGTTCTTGACAGAAAGGGAGCATGCCCT
GCAGGTTGTTAGAAGACTCTTCCCTGTTGACCGTGGACTGTTTGAGGATAAAGTCGCTAATATTTGGTGC
AGCGTTAATGTCTTTCTGAAGATTAAGGACACTTTGCCTCGCCACATCCAGATAGCGATCAGCTTTTGCT
TTACACTTTTGAGCTTGCTTCCTGCATGTATAAAACTGACAGTTCGACCCTCTTGTAAAGGATTCAGATT
TACTCTGGTTAGCTGTGCGCTATCATTCTTTCTGTTTTCTTTCCAAGTACATGAAAAGTCCATTCTCTTG
GTATCATTACCAGTTTGCTTAGTTTTAACTGAAATTCCTTTCATGTCAACCTGGTTTTTACTAGTTTCAA
CATTTAGCATGCTGCCTCTTCTATTAAAGGATGAACTCCTGCTGCCCTCGGTTGTGACAGTGATGGCATT
TGTAATAGCTTGTGGCACTTTCTTTCCAATGTTGGAGAACACTTCCGAAGAACAACTGCAGTTGAAGTCC
TTTGCTGTCTCTGTAAGGAGGCACCTTCCGGGCTTCACATTTTTGCCCAGAATTATGCAGTGTTTGTTTC
TTTCTTCAGTCATCACCATGGTCCTCCTGACGATTTTGAGTGTAACACTGGACCCTCCTCAGAAATTACC
AGACTTGTTTCCTGTACTTATATGTTTTGTTTCCTGTGTAAATTTTGTATTCTTCTTGGTATACTTTAAT
ATTGTAATCATGTGGGATTCCAAAAATGGAAGAAATCGGAAGAAAATTGAGTAG

Translation (507 aa):
MESWPWMAVVVLLGLTVRWTVSLSSYSGAGKPPMFGDYEAQRHWQEITLNLPVKQWYFNSSDNNLLYWGL
DYPPLTAYHSLLCAYVAKFINPDWVALHTSRGYESQAHKLFMRATVLAADLLIYVPAVLLYCYSLKEISP
KRKIASALCILLYPGLILIDYGHFQYNSVSLGFALWGVLGVSWDWDLLGSLAFCLALNYKQMELYHSLPF
FCFLLGKCFKKGLKGKGLALFIRIACTVLASFLLCWLPFLTEREHALQVVRRLFPVDRGLFEDKVANIWC
SVNVFLKIKDTLPRHIQIAISFCFTLLSLLPACIKLTVRPSCKGFRFTLVSCALSFFLFSFQVHEKSILL
VSLPVCLVLTEIPFMSTWFLLVSTFSMLPLLLKDELLLPSVVTVMAFVIACGTFFPMLENTSEEQLQLKS
FAVSVRRHLPGFTFLPRIMQCLFLSSVITMVLLTILSVTLDPPQKLPDLFPVLICFVSCVNFVFFLVYFN
IVIMWDSKNGRNRKKIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH