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Report for CCDS3879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3879.1 Public Homo sapiens 5 ROPN1L 24 110 108 CCDS HistoryNCBI Gene:83853Re-query CCDS DB by CCDS ID:3879.1Re-query CCDS DB by GeneID:83853See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274134.5 ENSP00000274134.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274134.5Link to Ensembl Protein Viewer:ENSP00000274134.4Re-query CCDS DB by Nucleotide ID:ENST00000274134Re-query CCDS DB by Protein ID:ENSP00000274134
Original member Current member EBI ENST00000503804.5 ENSP00000421405.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503804.5Link to Ensembl Protein Viewer:ENSP00000421405.1Re-query CCDS DB by Nucleotide ID:ENST00000503804Re-query CCDS DB by Protein ID:ENSP00000421405
Original member Current member NCBI NM_001201466.2 NP_001188395.1 Accepted alive Link to Nucleotide Sequence:NM_001201466.2Link to Protein Sequence:NP_001188395.1Re-query CCDS DB by Nucleotide ID:NM_001201466Re-query CCDS DB by Protein ID:NP_001188395Link to BLAST:NP_001188395.1
Original member Current member NCBI NM_031916.5 NP_114122.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031916.5Link to Protein Sequence:NP_114122.2Re-query CCDS DB by Nucleotide ID:NM_031916Re-query CCDS DB by Protein ID:NP_114122Link to BLAST:NP_114122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188395.1 230 Q96C74 230 100% 0 0
NP_114122.2 230 Q96C74 230 100% 0 0

Chromosomal Locations for CCDS 3879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 10442168 10442298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10448260 10448383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10449952 10450113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10461184 10461359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10464848 10464947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGCCGCTTCCCGACACCATGTTCTGCGCTCAGCAGATCCACATTCCCCCGGAGCTGCCGGACATCCTGA
AGCAATTCACCAAGGCTGCCATCCGCACCCAGCCGGCCGACGTGCTGCGGTGGTCCGCGGGCTATTTTTC
AGCTCTGTCGAGAGGAGATCCACTTCCTGTAAAGGACAGAATGGAAATGCCCACGGCAACCCAGAAAACA
GACACAGGCCTGACTCAAGGACTCCTGAAAGTTTTGCACAAGCAGTGTCACCACAAGCGGTATGTGGAAT
TAACAGATCTTGAGCAGAAGTGGAAGAACTTGTGCCTGCCGAAGGAAAAATTCAAAGCGCTCTTACAACT
GGATCCTTGTGAAAACAAAATCAAGTGGATAAACTTTTTAGCGCTTGGATGCAGCATGCTTGGTGGGTCC
TTGAACACTGCGCTGAAGCACCTGTGCGAGATCCTCACGGACGATCCGGAGGGCGGGCCCGCTCGCATCC
CCTTCAAGACGTTTTCCTACGTTTACCGCTACTTGGCCAGATTAGACTCAGATGTGTCTCCCTTGGAGAC
GGAATCCTACCTTGCCTCTCTAAAGGAAAATATAGACGCCAGGAAGAACGGCATGATAGGTCTTTCAGAT
TTCTTCTTTCCAAAGAGGAAACTTTTAGAAAGCATTGAAAACTCTGAAGATGTAGGCCATTAA

Translation (230 aa):
MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKT
DTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGCSMLGGS
LNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASLKENIDARKNGMIGLSD
FFFPKRKLLESIENSEDVGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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