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Report for CCDS38568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38568.1 Public Mus musculus 3 Nr1h5 23 108 98 CCDS HistoryNCBI Gene:381463Re-query CCDS DB by CCDS ID:38568.1Re-query CCDS DB by GeneID:381463See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058899.12 ENSMUSP00000052557.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058899.12Link to Ensembl Protein Viewer:ENSMUSP00000052557.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058899Re-query CCDS DB by Protein ID:ENSMUSP00000052557
Original member Current member NCBI NM_198658.2 NP_941060.2 Accepted alive Link to Nucleotide Sequence:NM_198658.2Link to Protein Sequence:NP_941060.2Re-query CCDS DB by Nucleotide ID:NM_198658Re-query CCDS DB by Protein ID:NP_941060Link to BLAST:NP_941060.2

Chromosomal Locations for CCDS 38568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102940870 102941117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102945247 102945360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102946034 102946156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102947751 102947864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102949043 102949142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102949288 102949392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102949481 102949623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102952171 102952311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102954522 102954887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102958320 102958383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGCAAATACCTATGTTGCTACGTCTGATGGGTACTACCTCGCTGAACCCACACAGTATTATGATATTT
TGCCAGAACAATTCCATTATCAGCTGTGTGATACAGATTTCCAAGAACCACCCTATTGTCAATATTCTAC
CGCTCAGTTTCCTCCAGCGTTACAGTCCCCATCTTTACAAAGTCATTTCAACACACATGGCTTGGATCCA
CAGTACAGTGGAGGCAGTTGGTGTGGACTCGACGCTCGAGAATCTGGTCAGTCCACTTATGTGGTTGTTC
ACGATGATGAAGATGAATTCCCTGGGGCACAAAGGTGCAGAGCAACTTGTTCTTTACGCTGGAAGGGTCA
AGATGACATGCTCTGCATGGTCTGCGGTGATAAGGCATCAGGATATCACTACAATGCACTTACTTGTGAG
GGGTGCAAAGGCTTTTTCCGGCGTAGCATTACCAAGAATGCAGTGTATTCTTGCAAGAACGGTGGTCACT
GTGAAATGGACATGTACATGCGCAGAAAATGCCAAGAGTGCAGACTGAAGAAGTGTAAGGCGGTGGGGAT
GTTGGCAGAATGTTTGCTCACAGAGATCCAGTGTAAGTCGAAGAGACTTCGCAAGAACTTCAAGCACGGG
CCTGCCCTGTACCCTGCCATCCAAGTGGAAGATGAAGGAGCAGACACCAAACACGTGTCATCCAGCACCA
GATCTGGGAAAGGGGTTCAGGACAACATGACTCTAACTCAAGAGGAACATCGGCTTCTGAATACCATAGT
GACTGTTCACCAAAAATCCATGATTCCCTTGGGAGAAACAAGCAAACTTCTGCAGGAGGGTTCCAACCCC
GAACTAAGTTTTCTGAGACTCTCAGAGGTATCAGTCCTCCACATACAAGGGCTAATGAAGTTTACCAAGG
GACTCCCAGGATTTGAAAATTTAACCACTGAGGATCAGGCTGCATTACAGAAGGCGTCAAAAACTGAAGT
GATGTTCCTTCATGTAGCCCAGCTTTATGGTGGGAAAGACTCAACCTCTGGAAGTACTATGAGACCAGCA
AAGCCCTCAGCTGGGACACTAGAGGTGCATAATCCTAGCGCTGATGAAAGTGTTCATTCTCCGGAAAACT
TTCTCAAGGAAGGCTACCCTTCGGCTCCTCTAACTGATATTACTAAAGAATTTATTGCCTCACTATCTTA
CTTCTACAGAAGAATGAGTGAACTTCATGTATCGGATACTGAATATGCTCTGCTTACGGCGACAACAGTG
CTTTTCTCAGATCGTCCATGCCTTAAAAATAAGCAGCATATAGAAAACCTACAAGAACCAGTCCTGCAAC
TTTTGTTTAAGTTTTCAAAAATGTACCATCCAGAAGACCCACAGCATTTCGCCCACCTCATAGGGAGGCT
TACTGAACTGAGAACTCTGAGTCACAGCCACTCTGAAATCCTTCGCATGTGGAAAACAAAGGACCCCAGG
TTGGTGATGTTATTCTCTGAGAAATGGGATCTGCACTCATTTTCCTGA

Translation (505 aa):
MANTYVATSDGYYLAEPTQYYDILPEQFHYQLCDTDFQEPPYCQYSTAQFPPALQSPSLQSHFNTHGLDP
QYSGGSWCGLDARESGQSTYVVVHDDEDEFPGAQRCRATCSLRWKGQDDMLCMVCGDKASGYHYNALTCE
GCKGFFRRSITKNAVYSCKNGGHCEMDMYMRRKCQECRLKKCKAVGMLAECLLTEIQCKSKRLRKNFKHG
PALYPAIQVEDEGADTKHVSSSTRSGKGVQDNMTLTQEEHRLLNTIVTVHQKSMIPLGETSKLLQEGSNP
ELSFLRLSEVSVLHIQGLMKFTKGLPGFENLTTEDQAALQKASKTEVMFLHVAQLYGGKDSTSGSTMRPA
KPSAGTLEVHNPSADESVHSPENFLKEGYPSAPLTDITKEFIASLSYFYRRMSELHVSDTEYALLTATTV
LFSDRPCLKNKQHIENLQEPVLQLLFKFSKMYHPEDPQHFAHLIGRLTELRTLSHSHSEILRMWKTKDPR
LVMLFSEKWDLHSFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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