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Report for CCDS38537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38537.1 Public Mus musculus 3 Snx27 23 108 98 CCDS HistoryNCBI Gene:76742Re-query CCDS DB by CCDS ID:38537.1Re-query CCDS DB by GeneID:76742See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107283.7 ENSMUSP00000102904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107283.7Link to Ensembl Protein Viewer:ENSMUSP00000102904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107283Re-query CCDS DB by Protein ID:ENSMUSP00000102904
Original member Current member NCBI NM_001082484.2 NP_001075953.1 Accepted alive Link to Nucleotide Sequence:NM_001082484.2Link to Protein Sequence:NP_001075953.1Re-query CCDS DB by Nucleotide ID:NM_001082484Re-query CCDS DB by Protein ID:NP_001075953Link to BLAST:NP_001075953.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075953.1 539 Q3UHD6-1 539 100% 0 0

Chromosomal Locations for CCDS 38537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94501224 94501271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94502170 94502229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94502856 94502984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94503459 94503608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94511042 94511131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94519048 94519211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94520188 94520266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94524186 94524290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94528912 94528976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94531197 94531389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94561769 94562000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94582245 94582549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGCGGACGAGGACGGGGAAGGTATTCACCCCTCAGCCCCGCACCGGAATGGAGGCGGCGGCGGGGGGT
CTGGGCTCCACTGCGCCGGGAACGGTGGCGGGGGAGGCGGCGGCCCGCGGGTCGTGCGCATTGTCAAGTC
CGAATCCGGCTACGGCTTCAACGTGCGGGGCCAAGTGAGCGAGGGCGGGCAACTGCGGAGCATCAACGGG
GAGCTGTACGCGCCGCTGCAGCATGTGAGCGCCGTGCTGCCCGGGGGGGCGGCCGACCGGGCCGGGGTGC
GCAAAGGGGACCGCATCCTGGAGGTGAACGGCGTGAATGTTGAGGGGGCGACACACAAGCAGGTGGTGGA
CCTGATCCGAGCAGGCGAGAAGGAATTGATCTTGACAGTGTTGTCTGTACCTCCTCATGAGGCTGATAAC
CTAGATCCCAGTGACGACTCCTTGGGACAATCATTTTATGATTACACAGAAAAGCAAGCAGTGCCCATAT
CGGTCCCCACATACAAACATGTGGAGCAGAATGGTGAGAAGTTTGTGGTATACAATGTTTACATGGCTGG
GAGGCAGCTGTGTTCTAAGCGGTACCGGGAGTTTGCCATACTGCACCAAAACCTGAAGAGAGAATTTGCC
AACTTTACATTTCCTCGACTTCCAGGAAAGTGGCCATTCTCATTATCAGAACAACAATTGGATGCCCGGC
GTCGTGGGTTGGAAGAATATCTAGAAAAGGTGTGTTCAATCCGAGTCATTGGTGAGAGTGACATCATGCA
GGAATTCCTGTCTGAGTCTGATGAGAATTACAATGGTGTGTCTGATGTAGAACTGAGAGTAGCACTACCG
GATGGAACAACGGTTACTGTCAGAGTTAAGAAGAACAGTACTACAGACCAAGTGTACCAGGCTATTGCAG
CAAAGGTTGGCATGGACAGTACAACAGTGAATTACTTTGCCTTATTTGAAGTGATCAATCATTCCTTTGT
ACGTAAGCTGGCACCTAATGAATTTCCTCATAAACTCTACGTCCAGAACTATACATCAGCTGTGCCAGGC
ACTTGCCTGACCATTCGCAAGTGGCTCTTTACAACAGAAGAAGAAGTCCTCTTAAATGACAATGACCTTG
CTGTTACGTACTTCTTTCATCAGGCTGTTGATGATGTAAAGAAAGGTTACATTAAAGCAGAAGAGAAATC
TTACCAGTTACAGAAGCTCCATGAACAAAGGAAGATGGTCATGTACCTCAACATGCTAAGGACCTGCGAG
GGCTACAATGAAATCATCTTCCCTCACTGTGCCTGTGACTCGAGGAGGAAGGGACATGTTATCACAGCCA
TCAGCATCACGCACTTTAAACTTCATGCATGCACTGAAGAAGGGCAGCTGGAGAACCAGGTAATAGCGTT
TGAATGGGATGAGATGCAGCGATGGGACACAGATGAAGAAGGAATGGCCTTCTGTTTTGAATATGCGCGA
GGAGAGAAGAAGCCTCGATGGGTTAAAATCTTCACACCATATTTCAATTACATGCATGAATGCTTTGAGA
GGGTGTTCTGCGAGCTCAAGTGGAGAAAAGAGAATATTTTCCAGATGGCGAGGTCACAGCAGAGGGATGT
GGCCACCTAG

Translation (539 aa):
MADEDGEGIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSING
ELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADN
LDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFA
NFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALP
DGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPG
TCLTIRKWLFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYAR
GEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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