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Report for CCDS38462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38462.1 Public Mus musculus 3 Fgg 23 108 98 CCDS HistoryNCBI Gene:99571Re-query CCDS DB by CCDS ID:38462.1Re-query CCDS DB by GeneID:99571See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048486.12 ENSMUSP00000037018.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048486.12Link to Ensembl Protein Viewer:ENSMUSP00000037018.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048486Re-query CCDS DB by Protein ID:ENSMUSP00000037018
Original member Current member NCBI NM_133862.2 NP_598623.1 Accepted alive Link to Nucleotide Sequence:NM_133862.2Link to Protein Sequence:NP_598623.1Re-query CCDS DB by Nucleotide ID:NM_133862Re-query CCDS DB by Protein ID:NP_598623Link to BLAST:NP_598623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598623.1 436 Q8VCM7 436 100% 0 0

Chromosomal Locations for CCDS 38462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 83007908 83007982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83008153 83008197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83008374 83008557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83008648 83008741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83010064 83010194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83010456 83010589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83011345 83011529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83012764 83013041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83014138 83014307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83014835 83014849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGTTGGTCTTTGCAGCCCCCGAGTTTCCTTCTTTGCTGCCTGCTTTTACTGTTCTCTCCAACGGGCC
TGGCATATGTGGCTACCAGAGATAACTGTTGCATCCTAGATGAGAGATTCGGTAGTTTCTGCCCAACCAC
CTGTGGTATCGCAGATTTCCTGTCTTCTTACCAAACCGACGTGGACAATGATCTCCGAACGCTGGAAGAC
ATCTTATTCCGGGCTGAAAACAGAACCACAGAAGCCAAAGAACTGATCAAAGCAATTCAGGTTTACTACA
ACCCAGACCAACCCCCAAAGCCAGGTATGATAGACAGTGCCACTCAGAAGTCTAAGAAGATGGTAGAAGA
AATTGTGAAATACGAAGCGCTGCTGTTAACCCACGAGACAAGCATTCGGTATTTACAGGAAATCTATAAT
TCAAATAACCAGAAGATCACAAACCTAAAACAGAAGGTAGCCCAGCTTGAAGCCCAGTGCCAGGAGCCTT
GCAAGGACTCTGTGCAAATCCATGACACAACTGGAAAAGATTGTCAGGAAATTGCCAACAAGGGCGCCAA
AGAAAGTGGACTTTACTTCATTCGACCTTTGAAAGCTAAGCAGCAGTTCTTAGTGTACTGTGAAATCGAC
GGATCTGGAAATGGTTGGACCGTATTGCAGAAGAGGATTGATGGCAGTTTGGATTTCAAGAAGAACTGGA
TTCAGTATAAAGAAGGATTTGGACACCTGTCGCCTACTGGCACCACAGAGTTTTGGCTGGGAAATGAGAA
GATTCATTTGATAAGCATGCAGTCCACAATTCCATATGCACTGAGAATACAGCTCAAAGACTGGAATGGC
AGAACCAGCACTGCGGACTATGCCATGTTCAGGGTGGGTCCCGAGTCTGACAAATACCGCCTGACCTATG
CCTACTTCATTGGTGGAGATGCCGGGGATGCCTTCGACGGCTACGATTTCGGCGATGACCCCAGTGACAA
GTTTTTCACATCCCACAACGGCATGCAGTTCAGTACCTGGGACAACGACAACGATAAGTTTGAAGGCAAC
TGTGCGGAACAGGATGGATCCGGCTGGTGGATGAACAAATGTCACGCAGGCCACCTCAATGGAGTTTATC
ACCAAGGTGGTACTTACTCAAAATCATCTACTACTAATGGTTTCGACGACGGCATTATTTGGGCGACCTG
GAAAAGCCGCTGGTATTCTATGAAGGAAACCACCATGAAGATAATTCCCTTCAACAGACTCTCCATCGGA
GAAGGACAGCAGCATCACATGGGGGGATCCAAACAGGCTGGAGACGTTTAA

Translation (436 aa):
MSWSLQPPSFLLCCLLLLFSPTGLAYVATRDNCCILDERFGSFCPTTCGIADFLSSYQTDVDNDLRTLED
ILFRAENRTTEAKELIKAIQVYYNPDQPPKPGMIDSATQKSKKMVEEIVKYEALLLTHETSIRYLQEIYN
SNNQKITNLKQKVAQLEAQCQEPCKDSVQIHDTTGKDCQEIANKGAKESGLYFIRPLKAKQQFLVYCEID
GSGNGWTVLQKRIDGSLDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISMQSTIPYALRIQLKDWNG
RTSTADYAMFRVGPESDKYRLTYAYFIGGDAGDAFDGYDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGN
CAEQDGSGWWMNKCHAGHLNGVYHQGGTYSKSSTTNGFDDGIIWATWKSRWYSMKETTMKIIPFNRLSIG
EGQQHHMGGSKQAGDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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