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Report for CCDS38443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38443.1 Public Mus musculus 3 Arhgef26 23 108 98 CCDS HistoryNCBI Gene:622434Re-query CCDS DB by CCDS ID:38443.1Re-query CCDS DB by GeneID:622434See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079300.12 ENSMUSP00000078281.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079300.12Link to Ensembl Protein Viewer:ENSMUSP00000078281.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079300Re-query CCDS DB by Protein ID:ENSMUSP00000078281
Original member Current member NCBI NM_001081295.1 NP_001074764.1 Accepted alive Link to Nucleotide Sequence:NM_001081295.1Link to Protein Sequence:NP_001074764.1Re-query CCDS DB by Nucleotide ID:NM_001081295Re-query CCDS DB by Protein ID:NP_001074764Link to BLAST:NP_001074764.1

Chromosomal Locations for CCDS 38443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 62339497 62340573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62341344 62341383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62345146 62345291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62377588 62377644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62380831 62380991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62419549 62419701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62423501 62423630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62426589 62426663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62428881 62428970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62432488 62432642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62448093 62448302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62458373 62458440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62459610 62459714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62460204 62460346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2610 nt):
ATGGACGGCGAAAGCGAGGTGGATTTTTCCAGCAACGGCGTCACCCCTTTGTGGCGGAGACGGTCCACCC
CTCCGCTCCAGTTGCTCAGCCGGAGCAAGCCGCGGCCACAGTCGTACCAGAGCCCCAGCGGGCTGCTGAT
CACCGACTTCCCTGTGGAGGAGCTGGCTGCCCTTCCCACGCCGCAGACTCCGGTCCGCGTACCCGCCGAC
CCGGACGACAGGACGGTGTCCAGGAGCCCCCAGCTTCTGAGCGCGCATCGGAGGCCGGTGACCAATGGTC
GCACGGTGTCCCCGGACTACAGAGCTGCTTCTCCTCGACTCCGACGGCCCAAGTCACCCCTGGTTTCTTA
CGCGGCGTCGGGCGGCTCCCCGAAGTCCACTTCTAATGGCACCGTGGCCTCGCCCGCGGCGCTGTTGTCG
CGCGCCTCCCGGACTCCGGACACCCCGGCCTCTTGCGCCACCGATGAGGACTGCACCGGGGTGACTGCCA
GTAAGGTATCTTCGCCCATTGCCAATGGCCTTGCCCATAAAACCGACTCATCTGGCCCAGTATCACAAAC
TGGTCAGCCAGCTGGGGACTTGGAGCTGGCCCCCTCGAGACTCTCTCCTGCTCTCCCACACAAGTCTTCA
GAACAAAAACTGCCACTCCAAAGGCTGCCCTCCCAAGGGAATGAGCTCCCAAACCCTTCCGTGGTTTTGA
GTACCAACAGCCCGGCGGCCCTCAAGATGGGAAAGCAGCAGATTATCCCAAAAAGCCTTGCCTCTGAAAT
TAAACTGAGTAAATCCAATAGTCAGAACGTGGAGTCCCATAGGAGGCTTCTCAAGGTGCGCAGCATGGTG
GAGGGACTGGGAGCACCCTTGGGCCACGAAGGGGAGGAAGGCGAAGTCGACAACGACATGGACAGTCCCG
GCTCCCTTCGGCGAGGCTTGAGGTCCACGTCTTACAGAAGGGCAGTGGTCAGCGGCTTTGATTTTGACAG
TCCCACCAGCTCAAAGAAGAAGAACAGAATGTCCCAGCCTGTCCTGAAGGCCGTAATGGAAGACAAGGAG
AAGTTCTCTAGCCTGGGAAGGATAAAGAAAAAAATACTGAAAGGACAAGGAACATTTGATGGGGAAGAAA
ATGCAGTCCTGTATCAAAACTACAAAGAAAAGGCCCTTGATATCGACTCTGATGAGGAACCAGAGGCCAA
GGAGCAGAAGGCAGAGGAGAGAATTGTGATTCACCACAAGCCCCTGCGCTCCACGTGGAGCCAGCTCTCC
GCGGTGAAAAGAAATGGGCTGTCTCAGACAGTGAGCCAGGAGGAAAGGAAGAGACAAGAGGCAATTTTTG
AAGTCATATCATCAGAGCATTCTTATTTACTCAGCTTGGAGATCTTGATACGGATGTTTAAAAACTCTAA
GGAACTGACTGATACAATGACTAAGACCGAGAGGCATCACCTTTTCTCCAACATTACCGATGTCTGGGAG
GCCAGCAAAAAATTCTTCACAGAGTTGGAAGCAAGACATCAGAATAACATCTTCATAGAGGATATCAGTG
ACATTGTAGAAAAGCACACAGCATCCACCTTTGACCCCTACGTGAAATACTGCACCAATGAAGTCTACCA
ACAGCGCACGCTGCAGAAGTTGCTAGCAACCAACCCGTCCTTTAAGGAAGTGTTGTCGAGGATCGAGTCC
CATGAAGACTGCAGGAACTTACCTATGATCTCTTTTCTCATTCTCCCCATGCAGAGAGTGACACGCCTTC
CCCTGCTGATGGATACTATCTGTCAAAAAACACCCAAGGACTCTCCAAAGTATGAAGTCTGCAAAAGGGC
CTTGAAGGAAGTGAGCAAGTTGGTCCGACTGTGCAATGAAGGAGCACGGAAGATGGAGCGGACAGAGATG
ATGTACACGATTAATTCCCAGCTGGAATTTAAAATCAAGCCTTTCCCCCTGGTCTCCTCTTCCCGGTGGT
TGGTGAAAAGAGGGGAGTTGACAGCCTATGTGGAAGACACAGTGCTGTTCTCCAAGAGGATGTCCAAACA
GCAGGTCTACTTCTTCCTGTTCAATGATGTGCTTATTATCACGAAGAAGAAGAGTGAAGAAAGCTACAAT
GTCAATGATTACTCCTTAAGGGACCAGCTGTTGGTGGAATCCTGTGACAATGAAGAGCTTAATTCCTCTC
CAGGGAAGAACCCTTCCACGATGCTTTACTCAAGACAGAGCTCTGCCACTCACCTCTTTACCCTGACAGT
CCTCAGCAACCATGCCAGTGAGAAGGTGGACATGCTACTAGGCGCTGAGACCCAGAGTGAGCGAGCCCGC
TGGATCACAGCCCTGGGACACAGCAGTGGGAAACAGCCACCAGACAGAACCACCCTGACCCAGGTGGAAA
TCATTAGGTCTTTTACTGCCAAACAGCCTGATGAACTTTCCCTGCAGGTGGCAGACGTGGTCCTCATTTA
TCAGCGTGTTGGCGATGGCTGGTATGAAGGGGAACGACTTCGAGATGGAGAGAGGGGCTGGTTTCCAATG
GAATGTGCCAAGGAGATAACATGTCAAGCTACTATTGATAAGAATGTGGAGAGGATGGGACGATTGCTAG
GACTGGAAACCAACGTGTAA

Translation (869 aa):
MDGESEVDFSSNGVTPLWRRRSTPPLQLLSRSKPRPQSYQSPSGLLITDFPVEELAALPTPQTPVRVPAD
PDDRTVSRSPQLLSAHRRPVTNGRTVSPDYRAASPRLRRPKSPLVSYAASGGSPKSTSNGTVASPAALLS
RASRTPDTPASCATDEDCTGVTASKVSSPIANGLAHKTDSSGPVSQTGQPAGDLELAPSRLSPALPHKSS
EQKLPLQRLPSQGNELPNPSVVLSTNSPAALKMGKQQIIPKSLASEIKLSKSNSQNVESHRRLLKVRSMV
EGLGAPLGHEGEEGEVDNDMDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSKKKNRMSQPVLKAVMEDKE
KFSSLGRIKKKILKGQGTFDGEENAVLYQNYKEKALDIDSDEEPEAKEQKAEERIVIHHKPLRSTWSQLS
AVKRNGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKELTDTMTKTERHHLFSNITDVWE
ASKKFFTELEARHQNNIFIEDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIES
HEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERTEM
MYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSKRMSKQQVYFFLFNDVLIITKKKSEESYN
VNDYSLRDQLLVESCDNEELNSSPGKNPSTMLYSRQSSATHLFTLTVLSNHASEKVDMLLGAETQSERAR
WITALGHSSGKQPPDRTTLTQVEIIRSFTAKQPDELSLQVADVVLIYQRVGDGWYEGERLRDGERGWFPM
ECAKEITCQATIDKNVERMGRLLGLETNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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