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Report for CCDS38297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38297.1 Public Mus musculus 2 Phf20 23 108 98 CCDS HistoryNCBI Gene:228829Re-query CCDS DB by CCDS ID:38297.1Re-query CCDS DB by GeneID:228829See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037401.9 ENSMUSP00000043138.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037401.9Link to Ensembl Protein Viewer:ENSMUSP00000043138.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037401Re-query CCDS DB by Protein ID:ENSMUSP00000043138
Original member Current member NCBI NM_172674.2 NP_766262.2 Accepted alive Link to Nucleotide Sequence:NM_172674.2Link to Protein Sequence:NP_766262.2Re-query CCDS DB by Nucleotide ID:NM_172674Re-query CCDS DB by Protein ID:NP_766262Link to BLAST:NP_766262.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766262.2 1010 Q8BLG0-1 1010 100% 0 0

Chromosomal Locations for CCDS 38297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156223367 156223449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156251776 156251947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156254226 156254310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156264281 156264360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156267155 156267542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156272542 156272655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156273683 156273871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156276489 156276668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156287801 156288079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156292466 156292564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156293414 156293578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156294097 156294275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156296649 156296748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156298521 156298716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156302783 156303179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156304631 156304814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156307294 156307436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3033 nt):
ATGACCAAGCACCCACCTAACAGACGAGGAATCAGCTTTGAAGTGGGAGCCCAGTTGGAAGCTCGGGACC
GTTTAAAAAACTGGTATCCAGCTCATATTGAAGACATTGACTACGAAGAAGGGAGAGTTCTCATCCATTT
CAAGCGTTGGAACCATCGTTACGATGAGTGGTTTTGCTGGGACAGTCCTTATCTGCGCCCTTTAGAGAAG
ATCCAGCTGAGGAAAGAGGGTTTACATGATGAGGATGGCTCTTCTGAATTTCAAATAAACCAGCAAGTGC
TTGCTTGCTGGTCTGACTGTCGATTTTATCCAGCCAGAGTCACTGCTGTGAACAAGGATGGTACTTACAC
TGTGAAATTTTATGATGGAGTAGTTCAAACTGTCAAACATATTCATGTCAAAGCTTTTTCCAAAGATCAG
AATATTGTGGGTAATGCTAGGCCTAAAGAAACAGACCACAAAAGTCTTTCATCGTCTCCTGAGAAACGAG
AGAAGTTTAAAGAACAGAGAAAAGTCACGGTCAATGTGAAGAAAGACAAAGTGGAAAAAGCCTTAAAGAC
AGAAAAGCGGCCCAAGCAACCTGACAAAGAGGGAAAGCTGATCTGCTCAGAAAAAGGCAAAGTGTCAGAG
AAAAGCCTTCCTAAGAACGAAAAGGAAGATAAGGAGAACATTTCCGAGAACGAGCGGGAGTACTCCGGGG
ATGCCCAGGTGGAAAAGAAGCCTGAGAAGGACCTTGTGAAGAACCCACAAGAGAACCTGAAGGAGCCAAA
AAGAAAACGAGGCAGACCCCCTTCCATAACTCCTACGGCTGTGGATTCAAACTCTCAAACTTTGCAACCA
ATAACATTGGAATTGAGAAGACGGAAAATATCAAAACGAAGTGACACCCCATTAAAGCGTCCCAGACTCG
ACAAAAATTCACCCCAGGAACAGTCAAAAAAACGCTCTGAAAATAGTGACAAAGACTTATCCAGGAGACG
GTCCTCCAGGCTGTCCACTAATGGGACCCGTGAGATCCTAGATCCTGACTCGATTGTACCTGATCTGGTT
CATACGGTTGATACAAACCCTCTACCAGACAAGTCACCCAGTGCCAAGGATTCTGCTGAAGGTCAGTTGA
AGTCTCCATTGGAAGCTGGCCAGGTCTCTTCTGCATTAACTTGCCACCCCATTGGGGATGGCCTGGGGGC
AGCAGATTTGGAGTTGAATTGCAAGTCAATGGGAGAAAACACGATGAAAACAGAACCTGTTTCTCCTCTT
GCTGAGGTGCAGGAAGTTTCAACTGTTGAAGTTCCAAATACTTTGAAGAAAGTTGATGACTCTGTGACGT
TGAATGTGCCAGCTGTGGACCTAGACCACAAGTTTCGATGCAAGGTTCTGGACTGTTTGAAATTTTTCCG
CAAGGCTAAATTGCTGCACTATCATATGAAGTATTTCCATGGGATGGAGAAGTCACCAGAGCCAGAGGAG
GGCCCAGGGAAGACGCATGTACAGACTCGGGGCTCTGCGGTGCCTGACAAGACAAGCCAGGAGAGCCTAA
CCAGGAAGCGGGTCTCTGCCAGTTCCCCCACTGCAAAAGAGAAGGAAAAGACTAAAGAGAAGAAATTCAA
AGAACTTGTGAGAGTGAAGCCAAAGAAGAAAAAGAAAAAGAAAAAGAAAACCAAGCCTGAATGTCCCTGC
AGTGAGGACATCAGTGATACTTCCCAGGAACCTTCTCCACCCAAAACATTTGCTGTCACCAGGTGTGGGT
CCTCACACAAGCCTGGGGTCCATATGAGCCCGCAGCTCCATGGTTCAGATAATGGAAACCACAAAGGGAA
ATTGAAAACCTGTGAGGAGGATAATTTGAGTGAGTCCTCTTCCGAGAGCTTTCTTTGGAGTGATGAGGAA
TATGGTCAAGATGTTGATGTGACCACCAACCCAGATGAGGAGCTTGAGGGCGACGACCGCTATGATTTTG
AGGTGGTCCGCTGCATCTGTGAAGTGCAGGAGGAAAATGACTTCATGATTCAGTGTGAAGAGTGCCAGTG
CTGGCAGCACGGGGTCTGCATGGGCTTACTGGAAGAAAACGTGCCTGAGAAATACACCTGCTATGTTTGC
CAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTATGACAAGGAGTGGCTGAGCCGGGGACACA
TGCATGGTCTGGCATTTCTGGATCAGAACTACTCCCACCAGAATGCCAGGAAGATCGTGGCCACCCACCA
GCTGCTCGGGGACGTGCAGAGAGTGATCCAAGTGCTGCACGGCCTGCAGCTCAAGATGAGCATTCTGCAA
AGCAGAGAGCATCCTGATCTGCAGCTATGGTGCCAGCCCTGGAAACAGCACTCGGGGGAGGGAAGAGCAC
ATCCCAGACACATCCACATCACAGACGCCAGGAGCGAGGAGTCCCCAAGCTATAGAACTTTGAATGGGGC
GGTGGAGAAGCCATCGCCCCTGCCCCGATCTGTGGAGGAGTCTTACATCACCAGTGAGCATTGCTACCAG
AAACCTCGCGCCTATTATCCCGCTGTGGAGCAGAGGCTGGTCGTGGAGACGAGAGGCTCTGCCCTTGATG
CTGCAGTCAGCCCCCTCTGTGAGAACGGCGACGACTCCCTCTCCCCTCGCCTAGGCTGGCCCATCGACCA
AGACAGGAGCAGAGGCGACATAGATCCCAAACCCAGCTCCCCAAAGGTGAGAGAGTACATTTCCAAGAAT
GTCTTGCCAGAAGAGACGCCTGCAAGGAAGCTGCTGGACAGAGGTGGAGAAGGGCTGGTGAGCTCTCAGC
ACCAGTGGCAGTTCAACCTGCTCACACATGTGGAGTCCCTGCAGGATGAGGTGACGCACCGGATGGACTC
CATTGAGAAGGAGCTGGACGTGCTGGAGAGCTGGCTGGACTACACTGGGGAGCTGGAGCCCCCAGAGCCA
CTGGCCAGGCTTCCGCAGCTCAAGCACTGCATCAAGCAGCTGCTGACTGACCTGGGCAAGGTGCAGCAGA
TCGCCCTCTGCTGCTCGACATGA

Translation (1010 aa):
MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGRVLIHFKRWNHRYDEWFCWDSPYLRPLEK
IQLRKEGLHDEDGSSEFQINQQVLACWSDCRFYPARVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSKDQ
NIVGNARPKETDHKSLSSSPEKREKFKEQRKVTVNVKKDKVEKALKTEKRPKQPDKEGKLICSEKGKVSE
KSLPKNEKEDKENISENEREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQP
ITLELRRRKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKDLSRRRSSRLSTNGTREILDPDSIVPDLV
HTVDTNPLPDKSPSAKDSAEGQLKSPLEAGQVSSALTCHPIGDGLGAADLELNCKSMGENTMKTEPVSPL
AEVQEVSTVEVPNTLKKVDDSVTLNVPAVDLDHKFRCKVLDCLKFFRKAKLLHYHMKYFHGMEKSPEPEE
GPGKTHVQTRGSAVPDKTSQESLTRKRVSASSPTAKEKEKTKEKKFKELVRVKPKKKKKKKKKTKPECPC
SEDISDTSQEPSPPKTFAVTRCGSSHKPGVHMSPQLHGSDNGNHKGKLKTCEEDNLSESSSESFLWSDEE
YGQDVDVTTNPDEELEGDDRYDFEVVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVC
QDPPGQRPGFKYWYDKEWLSRGHMHGLAFLDQNYSHQNARKIVATHQLLGDVQRVIQVLHGLQLKMSILQ
SREHPDLQLWCQPWKQHSGEGRAHPRHIHITDARSEESPSYRTLNGAVEKPSPLPRSVEESYITSEHCYQ
KPRAYYPAVEQRLVVETRGSALDAAVSPLCENGDDSLSPRLGWPIDQDRSRGDIDPKPSSPKVREYISKN
VLPEETPARKLLDRGGEGLVSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEP
LARLPQLKHCIKQLLTDLGKVQQIALCCST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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