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Report for CCDS38111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38111.1 Public Mus musculus 2 Lhx6 23 108 98 CCDS HistoryNCBI Gene:16874Re-query CCDS DB by CCDS ID:38111.1Re-query CCDS DB by GeneID:16874See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112966.9 ENSMUSP00000108590.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112966.9Link to Ensembl Protein Viewer:ENSMUSP00000108590.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112966Re-query CCDS DB by Protein ID:ENSMUSP00000108590
Original member Current member EBI ENSMUST00000148852.3 ENSMUSP00000135693.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148852.3Link to Ensembl Protein Viewer:ENSMUSP00000135693.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000148852Re-query CCDS DB by Protein ID:ENSMUSP00000135693
Original member Current member NCBI NM_001083127.1 NP_001076596.1 Accepted alive Link to Nucleotide Sequence:NM_001083127.1Link to Protein Sequence:NP_001076596.1Re-query CCDS DB by Nucleotide ID:NM_001083127Re-query CCDS DB by Protein ID:NP_001076596Link to BLAST:NP_001076596.1
Original member Current member NCBI NM_001355125.1 NP_001342054.1 Accepted alive Link to Nucleotide Sequence:NM_001355125.1Link to Protein Sequence:NP_001342054.1Re-query CCDS DB by Nucleotide ID:NM_001355125Re-query CCDS DB by Protein ID:NP_001342054Link to BLAST:NP_001342054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076596.1 348 Q9R1R0-2 348 100% 0 0
NP_001342054.1 348 Q9R1R0-2 348 100% 0 0

Chromosomal Locations for CCDS 38111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36083996 36084075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36090962 36091136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36091320 36091415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36091606 36091706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36094213 36094433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36102858 36102979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36103346 36103528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36103894 36103962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGTCTCGAAGGGACCGCTCCGCCTGCCATGG
CTCAGTCAGACGCAGAGGCCTTGGCAGGCGCTCTGGACAAGGACGAAGGTAGAGCCTCCCCATGTACGCC
CAGCACACCGTCTGTCTGCTCGCCGCCCTCTGCTGCCTCTTCCGTGCCGTCTGCCGGCAAGAATATCTGC
TCCAGTTGCGGTCTGGAGATCCTGGACCGGTATCTGCTCAAGGTCAACAACCTCATCTGGCACGTGCGGT
GCCTCGAGTGCTCCGTGTGTCGCACATCGCTGAGGCAGCAGAATAGCTGCTACATCAAGAACAAGGAGAT
CTACTGCAAGATGGACTACTTCAGCCGATTTGGAACCAAGTGCGCCCGGTGCGGCAGACAAATCTATGCC
AGTGACTGGGTGCGGCGCGCACGCGGCAATGCCTACCACCTGGCATGTTTCGCCTGCTTTTCCTGCAAGC
GCCAGCTATCCACCGGTGAGGAATTCGGCCTCGTTGAGGAGAAGGTGCTTTGCCGCATCCATTACGACAC
CATGATCGAGAACCTCAAGAGGGCCGCCGAGAACGGGAACGGTCTCACGCTGGAGGGGGCAGTGCCCTCG
GAACAGGACAGTCAGCCCAAGCCAGCCAAGCGCGCGCGGACGTCCTTCACCGCAGAGCAATTGCAGGTTA
TGCAGGCGCAGTTCGCGCAGGACAACAACCCGGACGCGCAGACGCTGCAGAAGCTAGCGGACATGACGGG
CCTCAGTCGCAGGGTCATCCAGGTGTGGTTTCAAAACTGCCGAGCGCGTCATAAAAAGCATACACCGCAG
CACCCAGTGCCGCCCTCTGGGGCACCCCCGACCCGCCTCCCTTCTGCCCTGTCCGACGACATCCACTACT
CTCCGTTCAGCAGCCCAGAGAGGGCGCGCATGGTCACCTTGCACGGCTACATTGAGAGTCATCCTTTTTC
AGTACTAACGCTGCCGGCGCTTGCACATCTGTCCATGGGCACCACACAGCTGCCCCTCAGCCGCTGA

Translation (348 aa):
MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGRASPCTPSTPSVCSPPSAASSVPSAGKNIC
SSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYA
SDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPS
EQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQ
HPVPPSGAPPTRLPSALSDDIHYSPFSSPERARMVTLHGYIESHPFSVLTLPALAHLSMGTTQLPLSR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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