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Report for CCDS38073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38073.1 Public Mus musculus 2 Sapcd2 23 108 98 CCDS HistoryNCBI Gene:72080Re-query CCDS DB by CCDS ID:38073.1Re-query CCDS DB by GeneID:72080See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028329.12 ENSMUSP00000028329.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028329.12Link to Ensembl Protein Viewer:ENSMUSP00000028329.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028329Re-query CCDS DB by Protein ID:ENSMUSP00000028329
Original member Current member NCBI NM_001081085.2 NP_001074554.1 Accepted alive Link to Nucleotide Sequence:NM_001081085.2Link to Protein Sequence:NP_001074554.1Re-query CCDS DB by Nucleotide ID:NM_001081085Re-query CCDS DB by Protein ID:NP_001074554Link to BLAST:NP_001074554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074554.1 425 Q9D818-2 425 100% 0 0

Chromosomal Locations for CCDS 38073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25372431 25372998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25373416 25373517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25374952 25375064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25375685 25375831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25375968 25376075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25376164 25376274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25376352 25376480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCCGTGGCAGCGATGGCCGAGCGTGGCCGCCTATCGCACGCTGCGCCCGCTCCTAGTACAGAGGGGC
TACCGCGAGCCTTTCTCCAGAGCCTGCGCACCCTCTTCGACATCCTGGACGACCGGCAACGCGGCTACGT
GCACCTGCGGGAGATCGAGTCCCGCTGGCAAGGTGCAGACGCACGCGAGCTGCCGTGCGGCGTGCTCGAG
GGCCTGCGCCAGGTGGCCCCGGCCAATGGCTACCTGACCTTCGAGCGTTTCGTAGCGGGCTTGCGCACCT
CGCTGCTGAAAGCCGACGGCGGCCAGCGGGATCAGGCACGCGTCGCGGCCCGGCCTGGGGACCAGTCGTC
CCTGCAGCAGCGCCTGATGTTCGCACCGGCCGATGAGCCGCGGACTGTCCTGGAGAGAAAGCCTCTGCCT
CTGAGTGCGTGCCCTGCTTCTGGTGGCCCCAGTGGCACCTCCCGGAACCCTGAGCTGTTATGTGTCCCGG
TGGAGGCGGCGTCCTGCCCCACAGAGACCGAGCGGCCCCTGAGCAAGGCGCTGGAGCAAATCCCCAGCGC
GGATTTGGGCTCTTCTCAGTGTGACACCCTGCAGAGACAACCCGGCCTGCTTCTCCACCCAGGAGGCAGA
GGAGGCAGCACAGGAGCACCTAGCACAAGTGCTGAAGAAGGTGCAGCAGCCTGTAAGACCCTGGGCAAGG
GCACAGGTGAAGCCCGGCAGGCTCCACGGGCCCGAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGT
GGACTGCAGCCTGTTGAAGCAGATGAAGGAGTTAGACCAGGAACAGGAGGTGCTTCTGCAGGGCCTGGAG
ATGATGGCACGGGGCCGAGACTGGTACCAGCAGCAGCTGCAGCGTGTGCAGGAACGTCAGCGCCGCCTGA
GCCAGAGCAGAGCTGCTGCAGACTTTGGGGCTGAAGGAAGCCCCCGCCCTCTGGGGAGGTTGCTGCCCAA
AGTACAGGAGGTGGCCCGGTGCCTGGGGGAGCTGTTGACTGCAGCCTGCTCTGGCAGAGCTCTGCCTTCG
TCCTCTTTAGGGCCCCTGGGCCCTCCCTCACCCTCAACTCCAGTCTGGCAGCAACAGACCATCCTCATGC
TGAAAGAACAGAACCGGCTTCTCACTCAGGAGGTGACTGATAAGAGTGAGCGCATCACGCAGCTGGAGCA
GGAGAAGTCTGCACTCATCAAGCAGCTGTTTGAGGCCCGAGCGCTCAGCCAGCAGGATTCGGGACCTCTG
GACTCCACTTTCATCTAG

Translation (425 aa):
MAVAAMAERGRLSHAAPAPSTEGLPRAFLQSLRTLFDILDDRQRGYVHLREIESRWQGADARELPCGVLE
GLRQVAPANGYLTFERFVAGLRTSLLKADGGQRDQARVAARPGDQSSLQQRLMFAPADEPRTVLERKPLP
LSACPASGGPSGTSRNPELLCVPVEAASCPTETERPLSKALEQIPSADLGSSQCDTLQRQPGLLLHPGGR
GGSTGAPSTSAEEGAAACKTLGKGTGEARQAPRARGERRRHTITNGVDCSLLKQMKELDQEQEVLLQGLE
MMARGRDWYQQQLQRVQERQRRLSQSRAAADFGAEGSPRPLGRLLPKVQEVARCLGELLTAACSGRALPS
SSLGPLGPPSPSTPVWQQQTILMLKEQNRLLTQEVTDKSERITQLEQEKSALIKQLFEARALSQQDSGPL
DSTFI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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