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Report for CCDS37877.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37877.2 Public Mus musculus 18 Fbxo15 23 108 98 CCDS HistoryNCBI Gene:50764Re-query CCDS DB by CCDS ID:37877.2Re-query CCDS DB by GeneID:50764See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 37877.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 37877.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224467.2 ENSMUSP00000153473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224467.2Link to Ensembl Protein Viewer:ENSMUSP00000153473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224467Re-query CCDS DB by Protein ID:ENSMUSP00000153473
Original member Current member NCBI NM_015798.5 NP_056613.2 Accepted alive Link to Nucleotide Sequence:NM_015798.5Link to Protein Sequence:NP_056613.2Re-query CCDS DB by Nucleotide ID:NM_015798Re-query CCDS DB by Protein ID:NP_056613Link to BLAST:NP_056613.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056613.2 433 Q9QZN0 433 99.7691% 0 1

Chromosomal Locations for CCDS 37877.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 84958273 84958376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84959069 84959311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84960010 84960219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84962594 84962720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84964109 84964191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84965431 84965585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84977367 84977491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84981122 84981376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCCATCGGAAATCTTGGTGAAGATACTTTCTTACTTGGATGCGGTGACCTTGGTGTGCATTGGATGTG
TGAGCAGACGCTTTTATCATTTGGCTGATGACAATCTTATTTGGGTCAGGAAGTACGCAGCTGCATTTAG
ATCAAAAAGATCACGTTGGAAAGCTACTTCAGTGGAGGAAACAGCCACAAGTCTGAGCTTGCTGTCAGTT
TGGGATAAAGAAGATGGATACTGGAAGAAAGAATATATTACAAAGCAGATCTCATCTGTGAAAGCAGCCC
TCACCAACAGCCTCAGTCCTGTCAAACGCCGCACAAGCCTTCCTTCGAAAACCAAAGAGTCCCTCAGAAT
ATCTGGCTTAGGTTGGACAATCATCTTAAGAGAAGCCAGTGGCAAAGAACACATCATGCAGCATTCGAAT
CTTTCCGTAAATGACAACTCTGTCACTGTTTTTTGGCATGACAAAAATTGGCCACATGTAGACACGTTGT
CCACCCTGGATTTGTATGGTGCCACACCAATTTTTATGGAGCAGTATAAAGGCCCTAACACAAGTTGTCC
ACGATGGCTGTCTTTAATTGAAAAGTACGATCTGAGTAATTTACGCAAGTCTGCTATGATTGGCTGCGAC
AGACATGTTCGGGTATTCTGTGTAAATCCTGGCCTCCTGGTGGGGCTGTGGCAGGAGAATGGTGGACTAG
CTTTTGTCATGGCAAATATTCATTCCCATGGCCTTTTCGAGAGAAGCATAATGGGCTCAGACACTATTCC
CTATACATTGCCTCCCGACACTACATTTGTGGATAACTACCCAGACTCAATGACCTTTTATGGAGATAAA
GGCTTTCAGCTGCATATCGACATTCATGGCAGTAAGACTTACTTCCTGTGTAGCACCTTCCACAATCTCT
TCTGCAGGAGAGCGGGCATTAACAATGGATATGTGAAGTTCTTGATGATAAACTTAAAAAATAACAGAGA
ACACCTACCTCTTGTTGGAAAAGTTGGCCTTGAATGGAGAACTGACTGTTTAAATGGCCGTATTGAGAGT
TGCATTGTAGTGGATATGACCTTGCTGGATGAGGACAAGAAGCCCATCTGGTATGTGAGTTCTCCAGTGT
GCTTGAGATCTGCCTGCCTTCCTGATTTCCCGCAGCCGGCTTACTCTTTCGAGTACATGGACAGCGTAGG
AGGAGTGTGCGCAGACCTAGGGTGGTTTGAAAATACCGATGAATACTTCATTGTCAGACTGGACATTTAC
CTCAGTGTAGCAAAATTACAACAATGGTTTGGGAGGCAATAA

Translation (433 aa):
MPSEILVKILSYLDAVTLVCIGCVSRRFYHLADDNLIWVRKYAAAFRSKRSRWKATSVEETATSLSLLSV
WDKEDGYWKKEYITKQISSVKAALTNSLSPVKRRTSLPSKTKESLRISGLGWTIILREASGKEHIMQHSN
LSVNDNSVTVFWHDKNWPHVDTLSTLDLYGATPIFMEQYKGPNTSCPRWLSLIEKYDLSNLRKSAMIGCD
RHVRVFCVNPGLLVGLWQENGGLAFVMANIHSHGLFERSIMGSDTIPYTLPPDTTFVDNYPDSMTFYGDK
GFQLHIDIHGSKTYFLCSTFHNLFCRRAGINNGYVKFLMINLKNNREHLPLVGKVGLEWRTDCLNGRIES
CIVVDMTLLDEDKKPIWYVSSPVCLRSACLPDFPQPAYSFEYMDSVGGVCADLGWFENTDEYFIVRLDIY
LSVAKLQQWFGRQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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