NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37841.1 Public Mus musculus 18 Fbxo38 23 108 98 CCDS HistoryNCBI Gene:107035Re-query CCDS DB by CCDS ID:37841.1Re-query CCDS DB by GeneID:107035See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048688.7 ENSMUSP00000047541.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048688.7Link to Ensembl Protein Viewer:ENSMUSP00000047541.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048688Re-query CCDS DB by Protein ID:ENSMUSP00000047541
Original member Current member NCBI NM_134136.4 NP_598897.2 Accepted alive Link to Nucleotide Sequence:NM_134136.4Link to Protein Sequence:NP_598897.2Re-query CCDS DB by Nucleotide ID:NM_134136Re-query CCDS DB by Protein ID:NP_598897Link to BLAST:NP_598897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598897.2 1194 Q8BMI0 1194 100% 0 0

Chromosomal Locations for CCDS 37841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 62504702 62504880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62505475 62505588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62505938 62506041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62506604 62506749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62507834 62508000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62510710 62510812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62511014 62511114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62514795 62515544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62516964 62517143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62518492 62518611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62519754 62519967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62520683 62520825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62522350 62522520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62526132 62526262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62527177 62527270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62529552 62529689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62530689 62530826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62533509 62533674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62533901 62534064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62536116 62536249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62540881 62541008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3585 nt):
ATGGGACCACGAAAGAAAAGTGCTAAAGTGTGTGTGATGGACAGTGAGGTCGCTGAGGAAATGACAGCCG
ATGAAGAGAAGGACTACATGAACCAGCTGTCACATGAAGTGCTCTGTCATATCTTCAGGTACCTGCCACT
ACAGGACATCATGTGCATGGAATGCCTCTCTCGGAAGCTAAAGGAGGCAGTCACTCTGTATCTGAGAGTT
GTCAGAGTGGTGGATCTCTGTGCAGGGCGCTGGTGGGAATATATGCCAAGTGGCTTCACAGATTCCAGTT
TCCTAACCCTTTTGAAGAAGATGCCAGATGTTGAACAGCTGTATGGCCTTCACCCTAGATACCTCGAGAG
GCGAAGAGTGAGGGGCCAGGAGGCTTTCAGCATCCCAGGAGTCTTGGAAGCTTTGCAAGCGTGCCCAAAC
TTGGTGGGTGTAGAAACATCTCATTTGGAGTTGGTAGAATCCATTTGGACATATATGCCGCATGTTCATA
TTTTGGGGAAATTTCGTAATCGTAACGGAGCATTTCCGATTCCTCCTGAAAATAAACTGAAAATCCCCAT
AGGAGCCAAAATCCAAACTTTGCATTTAGTTGGTGTCAATGTTCCTGAAATCCCTTGTATCCCTATGCTA
AGGCACCTGTACATGAAGTGGGTGAGACTCACTAAACCACAGCCGTTTAAAGATTTCCTTTGCATCAGCT
TGCGAACTTTTGTCATGAGGAACTGTGCAGGACCAACAAACTCCTTGAAATACGTGCCCTTGGTAACAGG
TCTGGCATCTGCCCGTAACCTGGAACACTTGGAAATGGTTCGAGTCCCTTTCCTGGGAGGTCTCATCCAA
CACGTGGTTGAAGACAGCTGGAGATCAGGTGGTTTTAGGAACTTGCACACTATTGTCTTAGGAGCTTGCA
AGAATGCCCTGGAAGTAGACCTTGGCTACCTCATCATCACTGCTGCGCGAAGGTTACATGAAGTTCGCAT
CCAGCCTTCTTTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAATTGGAGTTTCCCCAGTTT
GAAACCCTTCATCTGGGATATGTAGATGAGTTCTTGCTACAGAGCAGAATGGCGAATGCAGATTTGGTGA
AGTATGGCTTGGCTGATGTGGTAGAAAATCCTGGTATCATTACTGATATAGGGATGAAGGCAGTCAATGA
AGTTTTTTCCTGTATCAAATATCTGGCAATTTATAACTGTCCTCATCTACACAACCCATACAATTGGATC
TCAGACCACTCGAGGTGGATGCGACTGGTTGATATCAACCTCGTGCGGTGCCATGCTTTGAAGCTGGATT
CTTTTGGCCAGTTTGTTGAATTATTGCCCAGCCTGGAATTTATTTCTCTGGACCAGATGTTCCGTGAGCC
ACCCAAGGGCTGTGCTCGAGTTGGTCTGAGTGCAGGAACTGGAATTGGGGTTTCCTCAGCGCTTGTCAGC
AACCAGAATTCCAACAATGACAATGACAATAATGCTCCAAATAACAACGCCAACCTCCATGATAACAATC
ACCATCACCCAGATGATTCGGATGACGACAATGACTTTCGTCCAGACCTACAAGCAGGAGAGGCACAATT
TGCAGCCGATGCGTTGAATGAGATGGAAGACATGGTCCAGGAAGATGGAGAACTGGTAGCCGAGAGTGGA
AATGGTATGCCAGCTCACAATCGGGAAGTTCTTCCTGTGGATGCTGATGAGGAACAAGCAGGACCTAGTG
GTCTACAACGCGTGGTAAAACCTACACCAATTGCTGATCACGATTCAGAGAGCGATGATGAAGAAGATAG
TTTAGAACTCCAAGAAGTCTGGGCTCCTAAGAATGGCACCCGGCGTTACTCAGAGCGGGAAGAAAAGACT
GGAGACTCAGGACAGTCCAGGGAAACGGCAGTAAGTGGGAAAGGCAAGACTCCACTTCGAAAGAGGTGCA
ACAACTCCCACCAGACGGGCCAGGCGAAGCCGTTTCCCCTGGAGGAGAGCAGCTGTGAGAAAGGCTGTCA
GGTGACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCTAGGGATGTTTCTGAAAAGAAAAAATCCAAG
GATGTCTATCCCAGCTGCAGCAGCAGCAGCAGCAGCACAGCCGCCAGCACAGCGGGAAACGCCAGCTCAC
CCAGCACTGCTTCCCAGAGCCCGGACTTTGCAAGGACGGTGACCAGCAGCGGCTCTTCCGAGCCGAGCCC
TCCAGAAGTAGATGTATCCAGGCAGTGTGTCTGCTCCCCTGGTGGGTCAGAGGACTCTGAGGCCATGGAG
GAGGGAGATGCAGAGAGCTCTGTCTGCCCCAGATGCTGCTGTCTCAGGCCCCAGGAGTCTCAAAGGAGAA
CTGGCAGGTGTTCTGATGAGGAGCGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCGCGGATGGTAC
GAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAGAGGACT
AATGGGAGTGGCTGTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGTGC
AGTCTAATGAAGACTATCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACCGCTGAT
ATCTGAGTCAGAAGTTGCCAAAACAAAGCCATGCCATGCCATGAAACGAAAGCGAACTGCAGATAAGTCT
ACCAGCACCAGTGACCCTGTGATTGAAGATGACCACGTACAGGTTCTTGTATTAAAATCCAAAAATCTTG
TTGGAGTCACAATGACCAATTGTGGAATCACAGATCTAGTACTGAAAGACTGCCCCAAGATGATGTTCAT
CCATGCTACCAGGTGCAGGGTACTGAAGCATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGAC
TATGCACAGTGCAAGAAACTAAATATGGACCAGGTACTAGACCAAATACTGAGGATGCCTCCGGAGAGGA
ACCGGATCATCTACCTGCGCCCAATGCAGCAGGTAGACACACTAACTCTGGAGCAGAAGCTCTTCAGCGG
GCCCTACCCCTATCACATCTGCATCATCCACGAGTTCAGCAATCCTCCCAACGTGCGGAACAAGGTGCGC
ATCCGCAATTGGATGGACACGATAGCCAACATCAATCAAGAGCTCATTAAATACGAATTCTTCCTGGAAG
CCACTCGGACTGAAGAGGATTTAAAGAAGTACCCTAAGTATCCCTGGGGGAGAGAAATCTACACTTTAGA
GGGTGTTGTAGATGGAGCGCCGTATTCCATGATTTCCGACTTCCCTTGGCTGAGGTCACTGCGGACCGCA
GAGCCCAACAGCTTTGCCAGATATGATTTTGAAGATGATGAAGAGAGCACCATCTATGCTCCTCGAAGAA
AAGGGCAGTTGTCTGCAGACATTTGTATGGAGACAATAGGAGAGGAGATCTCAGAGATGCGCCAGATGAA
GAGGGGCATATTTCAGCGAGTAGTAGCGATTTTTATCCACTACTGTGATGTCAATGGAGAGCCAGTTGAA
GACGACTACATTTAA

Translation (1194 aa):
MGPRKKSAKVCVMDSEVAEEMTADEEKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKLKEAVTLYLRV
VRVVDLCAGRWWEYMPSGFTDSSFLTLLKKMPDVEQLYGLHPRYLERRRVRGQEAFSIPGVLEALQACPN
LVGVETSHLELVESIWTYMPHVHILGKFRNRNGAFPIPPENKLKIPIGAKIQTLHLVGVNVPEIPCIPML
RHLYMKWVRLTKPQPFKDFLCISLRTFVMRNCAGPTNSLKYVPLVTGLASARNLEHLEMVRVPFLGGLIQ
HVVEDSWRSGGFRNLHTIVLGACKNALEVDLGYLIITAARRLHEVRIQPSLTKDGVFSALKMAELEFPQF
ETLHLGYVDEFLLQSRMANADLVKYGLADVVENPGIITDIGMKAVNEVFSCIKYLAIYNCPHLHNPYNWI
SDHSRWMRLVDINLVRCHALKLDSFGQFVELLPSLEFISLDQMFREPPKGCARVGLSAGTGIGVSSALVS
NQNSNNDNDNNAPNNNANLHDNNHHHPDDSDDDNDFRPDLQAGEAQFAADALNEMEDMVQEDGELVAESG
NGMPAHNREVLPVDADEEQAGPSGLQRVVKPTPIADHDSESDDEEDSLELQEVWAPKNGTRRYSEREEKT
GDSGQSRETAVSGKGKTPLRKRCNNSHQTGQAKPFPLEESSCEKGCQVTSEQIKADMKAARDVSEKKKSK
DVYPSCSSSSSSTAASTAGNASSPSTASQSPDFARTVTSSGSSEPSPPEVDVSRQCVCSPGGSEDSEAME
EGDAESSVCPRCCCLRPQESQRRTGRCSDEERPSTSRACVVNGADGTRSAFSFRTLPQGGSSGPAHDERT
NGSGCGATGEDRRGSSQPESCDVQSNEDYPRRPLTRARSRLSHVPLISESEVAKTKPCHAMKRKRTADKS
TSTSDPVIEDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDCPKMMFIHATRCRVLKHLKVENAPIVNRFD
YAQCKKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLEQKLFSGPYPYHICIIHEFSNPPNVRNKVR
IRNWMDTIANINQELIKYEFFLEATRTEEDLKKYPKYPWGREIYTLEGVVDGAPYSMISDFPWLRSLRTA
EPNSFARYDFEDDEESTIYAPRRKGQLSADICMETIGEEISEMRQMKRGIFQRVVAIFIHYCDVNGEPVE
DDYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH