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Report for CCDS37817.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37817.2 Public Mus musculus 18 Tnfaip8 23 108 98 CCDS HistoryNCBI Gene:106869Re-query CCDS DB by CCDS ID:37817.2Re-query CCDS DB by GeneID:106869See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 37817.2
The coding region has been updated to extend the N-terminus by 14-aa to an upstream AUG which is well supported by orthologs in many other species. The uAUG has a weak Kozak signal, but there is no indication that it is not used at least some of the time.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37817.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148159.2 ENSMUSP00000119041.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148159.2Link to Ensembl Protein Viewer:ENSMUSP00000119041.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000148159Re-query CCDS DB by Protein ID:ENSMUSP00000119041
Original member Current member NCBI NM_134131.2 NP_598892.2 Accepted alive Link to Nucleotide Sequence:NM_134131.2Link to Protein Sequence:NP_598892.2Re-query CCDS DB by Nucleotide ID:NM_134131Re-query CCDS DB by Protein ID:NP_598892Link to BLAST:NP_598892.2

Chromosomal Locations for CCDS 37817.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50053547 50053619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50090200 50090765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGTCCGTGGCGGTGGCGCCTGTGGCTGTGCACCCCGACAGCATGCTCTCCGAAGCGGAGGAGCCCAGGG
AAGTGGCTACAGATGTCTTCAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCCTGGGCAAAAT
GGTATCCAAATCCATCGCCACCACGCTGATCGACGACACCAGCAGCGAGGTGCTAGATGAGCTGTACAGG
GTGACCAAGGAGTACACCCAGAACAAGAAGGAGGCGGAGAGGGTCATCAAGAACCTCATCAAGACGGTCA
TCAAGCTGGCCGTCCTCCACAGGAACAATCAGTTCAATCAAGACGAGCTGGCGCTCATGGAGAAGTTCAA
GAAGAAGGTGCACCAGCTTGCCATGACGGTCGTCAGCTTCCACCAGGTAGAGTACACCTTCGACCGCAAT
GTGCTGTCCAGGCTGCTGAACGAGTGCCGAGAGCTCCTACACGAGATCATTCAGCGCCACCTTACCGCCA
AGTCTCACGGACGGGTTAATAATGTCTTTGACCATTTTTCAGATTGTGATTTTTTGGCTGCCTTGTACAA
TCCCTTTGGAAAGTTTAAACCTCACTTACAGAAACTTTGCGACGGCATCAACAAAATGTTAGATGAAGAG
AACATATGA

Translation (212 aa):
MSVAVAPVAVHPDSMLSEAEEPREVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYR
VTKEYTQNKKEAERVIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVEYTFDRN
VLSRLLNECRELLHEIIQRHLTAKSHGRVNNVFDHFSDCDFLAALYNPFGKFKPHLQKLCDGINKMLDEE
NI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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