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Report for CCDS3779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3779.1 Public Homo sapiens 4 TMEM154 24 110 108 CCDS HistoryNCBI Gene:201799Re-query CCDS DB by CCDS ID:3779.1Re-query CCDS DB by GeneID:201799See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304385.8 ENSP00000302144.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304385.8Link to Ensembl Protein Viewer:ENSP00000302144.3Re-query CCDS DB by Nucleotide ID:ENST00000304385Re-query CCDS DB by Protein ID:ENSP00000302144
Original member Current member NCBI NM_152680.3 NP_689893.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152680.3Link to Protein Sequence:NP_689893.1Re-query CCDS DB by Nucleotide ID:NM_152680Re-query CCDS DB by Protein ID:NP_689893Link to BLAST:NP_689893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689893.1 183 Q6P9G4 183 100% 0 0

Chromosomal Locations for CCDS 3779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152628546 152628561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152640928 152640985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152643088 152643173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152644415 152644442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152652538 152652576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152652667 152652927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152679870 152679933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGCAGGCTCCCCGCGCAGCCCTAGTCTTCGCCCTGGTGATCGCGCTCGTTCCCGTCGGCCGGGGTAATT
ATGAGGAATTAGAAAACTCAGGAGATACAACTGTGGAATCTGAAAGACCAAATAAAGTGACTATTCCAAG
CACATTTGCTGCAGTGACCATCAAAGAAACATTAAATGCAAATATAAATTCTACCAACTTTGCTCCGGAT
GAAAATCAGTTAGAGTTTATACTGATGGTGTTAATCCCATTGATTTTATTGGTCCTCTTACTTTTATCCG
TGGTATTCCTTGCAACATACTATAAAAGAAAAAGAACTAAACAAGAACCTTCTAGCCAAGGATCTCAGAG
TGCTTTACAGACATATGAACTGGGAAGTGAAAACGTGAAAGTCCCTATTTTTGAGGAAGATACACCCTCT
GTTATGGAAATTGAAATGGAAGAGCTTGATAAATGGATGAACAGCATGAATAGAAATGCCGACTTTGAAT
GTTTACCTACCTTGAAGGAAGAGAAGGAATCAAATCACAACCCAAGTGACAGTGAATCCTAA

Translation (183 aa):
MQAPRAALVFALVIALVPVGRGNYEELENSGDTTVESERPNKVTIPSTFAAVTIKETLNANINSTNFAPD
ENQLEFILMVLIPLILLVLLLLSVVFLATYYKRKRTKQEPSSQGSQSALQTYELGSENVKVPIFEEDTPS
VMEIEMEELDKWMNSMNRNADFECLPTLKEEKESNHNPSDSES


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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