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Report for CCDS37303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37303.1 Public Mus musculus 16 Masp1 23 108 98 CCDS HistoryNCBI Gene:17174Re-query CCDS DB by CCDS ID:37303.1Re-query CCDS DB by GeneID:17174See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089883.6 ENSMUSP00000087327.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089883.6Link to Ensembl Protein Viewer:ENSMUSP00000087327.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089883Re-query CCDS DB by Protein ID:ENSMUSP00000087327
Original member Current member NCBI NM_008555.3 NP_032581.2 Accepted alive Link to Nucleotide Sequence:NM_008555.3Link to Protein Sequence:NP_032581.2Re-query CCDS DB by Nucleotide ID:NM_008555Re-query CCDS DB by Protein ID:NP_032581Link to BLAST:NP_032581.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032581.2 704 P98064-1 704 100% 0 0

Chromosomal Locations for CCDS 37303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23452382 23452572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23452876 23452975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23454863 23454930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23457998 23458183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23459628 23459741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23465028 23465165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23474874 23474948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23476267 23476404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23483395 23483473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23484351 23484469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23485602 23485749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23491922 23492118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23494622 23494753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23496080 23496257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23513832 23514078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23520546 23520550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGAGGTTCCTGTCTTTCTGGCGGCTCCTCCTCTACCACGCTCTGTGCCTCGCCCTGCCGGAGGTTTCAG
CCCATACCGTGGAGCTAAACGAAATGTTTGGTCAGATCCAGTCACCTGGCTATCCAGATTCCTATCCAAG
TGACTCTGAGGTGACATGGAATATTACTGTCCCGGAGGGGTTTCGAATCAAGCTTTACTTCATGCACTTC
AACTTGGAATCCTCCTATCTTTGTGAATACGACTATGTGAAGGTAGAAACAGAAGACCAGGTGCTGGCAA
CCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTCTTTCGCCTGGCAC
CTTCATGTCTGTCACTTTCCGGTCAGATTTCTCCAATGAGGAACGATTCACAGGCTTCGACGCCCACTAC
ATGGCTGTAGATGTGGATGAGTGCAAGGAGAGGGAAGATGAAGAGCTGTCCTGTGACCACTACTGTCACA
ACTACATCGGTGGCTACTACTGCTCCTGCCGCTTTGGCTACATCCTCCACACAGACAACAGGACCTGCCG
AGTGGAATGCAGCGGCAATCTCTTTACCCAGAGGACAGGCACAATCACCAGCCCCGATTACCCCAACCCT
TATCCCAAGAGCTCAGAATGTTCCTATACCATTGACCTGGAGGAAGGCTTCATGGTCAGCCTGCAGTTTG
AGGACATTTTTGACATTGAAGACCATCCTGAGGTGCCCTGTCCCTATGACTACATTAAGATTAAAGCTGG
TTCAAAAGTATGGGGTCCCTTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACCCAGACTCACAGTGTC
CAGATCCTATTCCGCAGCGACAACTCAGGAGAGAACCGAGGCTGGAGGCTCTCCTACAGAGCGGCAGGAA
ATGAGTGCCCAAAGCTACAGCCTCCTGTGTACGGGAAAATCGAGCCCTCGCAGGCCGTGTATTCCTTCAA
AGACCAAGTGCTCGTCAGCTGTGACACAGGCTACAAAGTGCTAAAGGATAACGAGGTGATGGACACATTC
CAAATTGAGTGTCTGAAGGACGGTGCATGGAGTAACAAGATCCCCACCTGTAAAATTGTAGACTGTGGAG
CTCCTGCAGGGCTGAAACATGGGCTAGTAACCTTCTCCACCAGAAACAACCTCACCACATACAAATCTGA
GATAAGGTACTCCTGCCAACAGCCCTATTACAAGATGCTTCACAATACCACAGGTGTATATACGTGTTCT
GCTCATGGGACCTGGACGAACGAAGTGCTCAAGAGAAGCCTGCCCACCTGCCTTCCAGTGTGTGGTGTCC
CCAAGTTCTCCCGGAAGCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACCATGCCATG
GATTGCCATGCTGTCACACCTGAACGGACAACCCTTCTGTGGGGGTAGCCTTTTAGGTTCCAACTGGGTT
TTGACAGCTGCTCACTGCCTCCACCAGTCACTTGATCCAGAAGAACCAACCCTACACAGCTCATACTTGC
TCAGCCCTTCTGACTTCAAAATTATCATGGGAAAGCACTGGAGACGGCGCTCAGACGAAGACGAGCAGCA
CCTGCATGTAAAGCGCACCACGCTCCACCCACTGTACAACCCCAGCACGTTTGAGAACGACCTTGGTCTG
GTGGAACTGTCAGAGAGCCCGAGGCTGAACGACTTTGTGATGCCTGTCTGTCTGCCTGAGCAGCCTTCCA
CTGAAGGAACCATGGTCATCGTCAGTGGCTGGGGGAAGCAGTTCTTACAGAGGTTTCCAGAGAACCTGAT
GGAGATTGAAATCCCAATTGTAAACTCTGACACCTGCCAGGAGGCCTATACCCCATTGAAGAAGAAAGTG
ACCAAGGACATGATCTGTGCCGGAGAAAAGGAAGGGGGGAAAGATGCCTGTGCTGGTGACTCTGGAGGCC
CTATGGTGACCAAAGATGCAGAGAGAGACCAATGGTACCTGGTGGGCGTGGTGTCCTGGGGTGAAGATTG
CGGGAAGAAAGATCGCTATGGAGTCTATTCTTACATCTATCCCAACAAGGACTGGATCCAGAGGATCACT
GGGGTGAGGAACTGA

Translation (704 aa):
MRFLSFWRLLLYHALCLALPEVSAHTVELNEMFGQIQSPGYPDSYPSDSEVTWNITVPEGFRIKLYFMHF
NLESSYLCEYDYVKVETEDQVLATFCGRETTDTEQTPGQEVVLSPGTFMSVTFRSDFSNEERFTGFDAHY
MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSGNLFTQRTGTITSPDYPNP
YPKSSECSYTIDLEEGFMVSLQFEDIFDIEDHPEVPCPYDYIKIKAGSKVWGPFCGEKSPEPISTQTHSV
QILFRSDNSGENRGWRLSYRAAGNECPKLQPPVYGKIEPSQAVYSFKDQVLVSCDTGYKVLKDNEVMDTF
QIECLKDGAWSNKIPTCKIVDCGAPAGLKHGLVTFSTRNNLTTYKSEIRYSCQQPYYKMLHNTTGVYTCS
AHGTWTNEVLKRSLPTCLPVCGVPKFSRKQISRIFNGRPAQKGTMPWIAMLSHLNGQPFCGGSLLGSNWV
LTAAHCLHQSLDPEEPTLHSSYLLSPSDFKIIMGKHWRRRSDEDEQHLHVKRTTLHPLYNPSTFENDLGL
VELSESPRLNDFVMPVCLPEQPSTEGTMVIVSGWGKQFLQRFPENLMEIEIPIVNSDTCQEAYTPLKKKV
TKDMICAGEKEGGKDACAGDSGGPMVTKDAERDQWYLVGVVSWGEDCGKKDRYGVYSYIYPNKDWIQRIT
GVRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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