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Report for CCDS36992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36992.1 Public Mus musculus 14 Pcdh9 23 108 98 CCDS HistoryNCBI Gene:211712Re-query CCDS DB by CCDS ID:36992.1Re-query CCDS DB by GeneID:211712See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068992.7 ENSMUSP00000070935.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068992.7Link to Ensembl Protein Viewer:ENSMUSP00000070935.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000068992Re-query CCDS DB by Protein ID:ENSMUSP00000070935
Original member Current member EBI ENSMUST00000195826.5 ENSMUSP00000141396.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195826.5Link to Ensembl Protein Viewer:ENSMUSP00000141396.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195826Re-query CCDS DB by Protein ID:ENSMUSP00000141396
Original member Current member NCBI NM_001081377.3 NP_001074846.1 Accepted alive Link to Nucleotide Sequence:NM_001081377.3Link to Protein Sequence:NP_001074846.1Re-query CCDS DB by Nucleotide ID:NM_001081377Re-query CCDS DB by Protein ID:NP_001074846Link to BLAST:NP_001074846.1

Chromosomal Locations for CCDS 36992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 93015512 93015885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 93326679 93326880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 93560476 93560577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 93885697 93888732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3714 nt):
ATGGACCTGAGGGATTTTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTC
AAGAACTTATTTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATAGGAAATATACCAAAGGATCT
GAATATTTCTCACATCAATGCTGCCACGGGGACCAGTGCCAGCCTTGTCTACAGACTGGTTTCAAAAGCT
GGGGATGCCCCTCTGGTGAAAGTATCGAGTAGCACTGGGGAGATTTTCACAACCTCCAACAGAATAGACA
GAGAGAAACTCTGTGCTGGGGCTTCATACGCTGAGGAGAACGAGTGCTTCTTTGAACTTGAAGTAGTGAT
CCTCCCCAATGACTTTTTCAGGCTGATCAAAATCAAGATCATTGTCAAGGATACCAATGATAATGCCCCC
ATGTTTCCGTCTCCTGTCATCAATATTTCCATCCCAGAGAACACTTTGATCAACAGCCGCTTTCCAATCC
CATCAGCCACAGACCCTGACACGGGCTTCAATGGGGTACAGCATTATGAATTACTAAATGGACAGAGTGT
TTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAAAAGTGGCCGCAATTGATTGTTCAGCAGAACTTG
GATAGAGAACAAAAAGATACCTATGTGATGAAAATCAAAGTGGAGGATGGGGGCACGCCACAGAAATCGA
GCACAGCTATTCTCCAGGTCACAGTAAGTGATGTCAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGT
AGAAGTGCATATTCCAGAGAATGCTCCTGTGGGGACCTCTGTCATTCAGCTCCATGCCACTGATGCAGAC
ATAGGCAGTAATGCTGAAATCCGGTATATTTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTG
CTTTAAATAATACAACTGGGCTGATAACAGTTCAGAGGTCTTTAGATAGGGAAGAGACAGCCATTCACAA
AGTGACAGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCCAGAGCCACCGTGACCATCAATGTCACCGAT
GTAAATGATAACCCTCCAAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACAGTGTATCTCT
CTGAGAAAGACCCTGTCAATACAAAGATTGCCCTCATTACAGTTTCAGATAAGGACACAGATGTGAATGG
CAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCAGTGTATGACAACCAGTATCTG
CTAGAGACCTCTTCTCTGCTGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATCGTTGCCTCTGATT
CGGGGAAGCCCAGTTTGAATCAGACTGCCCTGGTAAGGGTTAAGCTCGAGGATGAAAATGACAACCCACC
AATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAAAACAACCGACGTGGGTTATACTTAACAACT
ATTAGTGCTACAGATGAAGACAGTGGAAAAAATGCAGACATTGTTTATCAGCTTGGACCGAATGCCTCCT
TCTTTGATCTGGACAGAAAGACAGGAGTTTTGACAGCCTCCAGAGTCTTTAACAGGGAGGAACAAGAGCG
GTTCATTTTTACAGTAACTGCCAGGGACAATGGGACCCCTCCCCTCCAGAGCCAAGCAGCAGTGATAGTT
ACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCACTTTCAGTTTTTTGTGTCTGAGA
ATCTGCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGACGAAGACGCTGGAGAGAATAAAGCTGT
GACTCTTTCCATTCTAAATGACAATGAAAATTTTGTGTTGGATCCCTATTCAGGAGTCATAAAGTCCAAT
GTCTCCTTTGATAGAGAGCAGCAGAGTTCCTACACGTTTGACGTCAAAGCCACCGACGGGGGACAGCCAC
CACGGTCCTCTACTGCAAAAGTAACTATCAATGTCATGGATGTCAATGACAATAGTCCAGTTGTCATTTC
TCCACCATCCAACACCTCCTTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGTTCTGTGGTTGCTGAAGTG
TTTGCGGTGGATATTGACACCGGAATGAATGCAGAACTCAAGTATACCATAGTGAGCGGGAACAACAAGG
GATTATTTCGGATTGATCCAGTAACAGGCAATATCACCTTAGAAGAGAAGCCAGCACCTACTGATGTGGG
CCTGCACCGTCTTGTGGTCAACATAAGTGACCTGGGGTACCCTAAGGCTTTGCACACTCTCGTGCTGGTA
TTTCTTTATGTGAACGACACTGCTGGAAACACCTCATATATATATGACTTGATCCGTAGGACTATGGAGA
CCCCACTGGACCGGAACATAGGAGATAGTGGTCAACCTTATCAGAACGAGGACTATCTCACCATCATGAT
TGCCATCGTTGCTGGGGCCATGGTGGTCATTGTTGTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCAT
GCGTCCAGGTTCAAGGCCGCTCAGAGGAGCAAACAAGGGGCTGAATGGATGTCCCCAAACCAGGAGAATA
AACAAAATAAGAAAAAGAAACGGAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACTTTGTTACTAT
TGAAGAGTCCAAACCCGATGATGCCGTTCATGAACCCATCAATGGGACCATAAGCCTGCCTGCCGAGCTG
GAGGAACAGGGTATAGGAAGATTTGACTGGGGCCCAGCCCCTCCAACCACCTTCAAGCCTAACAGCCCTG
ACCTGGCCAAGCACTACAAGTCGGCCTCTCCTCAGCCCGCTTTTCATCTCAAACCTGACACTCCAGTTTC
TGTGAAAAAGCACCACGTCATTCAAGAGCTCCCGTTGGACAACACCTTTGTTGGGGGCTGCGACACCCTT
TCCAAACGCTCCTCCACTAGTTCAGATCACTTCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGA
CAAAGGGCCCCTTACACACCAGACAGTGTAACTCATACAGCAAAAATGACAATATTCCTGTCACACATCA
GAAATGTCCCGGCTCTACCAGTTTCCACATTCGAGAGAATGAAGAAAGTCATTCTGAGTCTCAGCGCCGT
GTTACCTTTCACCTTCCGGATGGCTCCCAGGAAAGCTGCAGTGACAGTGGTCTGGGAGACCACGAGCCGG
TGGGTAGTGGAACCCTGATCTCACACCCTCTTCCTCTGGTTCAGCCACAGGACGAATTCTACGACCAGGC
CTCTCCGGACAAGAGGACCGAAGCAGATGGCAACTCGGATCCCAATTCTGATGGACCTCTGGGTCCCCGA
GGTTTAGCTGAAGCTACAGAGATGTGCACTCAAGAGTGTCTGGTTTTGGGTCACTCTGATAATTGCTGGA
TGCCTCCTGGCTTGGGTCCATACCAACACCCTAAATCTCCTCTGTCAACCTTTGCACCCCAGAAAGAATG
GATCAAGAAAGACAAGCTTGTGAATGGGCACACCCTGACAAGAGCGTGGAAAGAAGACACCAACAGGAAC
CAATTCAATGACCGTAAGCAGTATGGCTCCAATGAAGGCCATTTCAACAATGGCGGCCACATGGCGGACA
TTCCTCTGGCAAATCTGAAGTCCTATAAGCAAGCAGGAGGCACGATTGAGAGTCCTAAGGAGCACCAACT
TTAA

Translation (1237 aa):
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRLVSKA
GDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAP
MFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNL
DREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD
IGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTD
VNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTT
ISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIV
TVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYSGVIKSN
VSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEV
FAVDIDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLVLV
FLYVNDTAGNTSYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAEL
EEQGIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNTFVGGCDTL
SKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSYSKNDNIPVTHQKCPGSTSFHIRENEESHSESQRR
VTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPR
GLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKEDTNRN
QFNDRKQYGSNEGHFNNGGHMADIPLANLKSYKQAGGTIESPKEHQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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