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Report for CCDS36932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36932.1 Public Mus musculus 14 Tgm1 23 108 98 CCDS HistoryNCBI Gene:21816Re-query CCDS DB by CCDS ID:36932.1Re-query CCDS DB by GeneID:21816See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002389.8 ENSMUSP00000002389.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002389.8Link to Ensembl Protein Viewer:ENSMUSP00000002389.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002389Re-query CCDS DB by Protein ID:ENSMUSP00000002389
Original member Current member EBI ENSMUST00000168729.7 ENSMUSP00000128090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168729.7Link to Ensembl Protein Viewer:ENSMUSP00000128090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168729Re-query CCDS DB by Protein ID:ENSMUSP00000128090
Original member Current member EBI ENSMUST00000178034.8 ENSMUSP00000137642.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178034.8Link to Ensembl Protein Viewer:ENSMUSP00000137642.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178034Re-query CCDS DB by Protein ID:ENSMUSP00000137642
Original member Current member NCBI NM_001161714.1 NP_001155186.1 Accepted alive Link to Nucleotide Sequence:NM_001161714.1Link to Protein Sequence:NP_001155186.1Re-query CCDS DB by Nucleotide ID:NM_001161714Re-query CCDS DB by Protein ID:NP_001155186Link to BLAST:NP_001155186.1
Original member Current member NCBI NM_001161715.1 NP_001155187.1 Accepted alive Link to Nucleotide Sequence:NM_001161715.1Link to Protein Sequence:NP_001155187.1Re-query CCDS DB by Nucleotide ID:NM_001161715Re-query CCDS DB by Protein ID:NP_001155187Link to BLAST:NP_001155187.1
Original member Current member NCBI NM_019984.3 NP_064368.3 Accepted alive Link to Nucleotide Sequence:NM_019984.3Link to Protein Sequence:NP_064368.3Re-query CCDS DB by Nucleotide ID:NM_019984Re-query CCDS DB by Protein ID:NP_064368Link to BLAST:NP_064368.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155186.1 815 Q9JLF6 815 99.8773% 0 1
NP_001155187.1 815 Q9JLF6 815 99.8773% 0 1
NP_064368.3 815 Q9JLF6 815 99.8773% 0 1

Chromosomal Locations for CCDS 36932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55700203 55700428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55704304 55704440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55704808 55704968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55705458 55705739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55705841 55705994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55706440 55706528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55708654 55708757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55708883 55709021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55709394 55709568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55709922 55710029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55710468 55710586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55710939 55711187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55712101 55712289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55712434 55712749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGGAAGGTCCTCGCTCAGACGTGGGCCGCTGGGGCAGGAGCCCCTGGCAGCCCCCTACAACACCGTCAC
CGGAGCCAGAGCCGGTGCCGGAGCCAGACAGACGCTCGCGCTCCCGCCGAGGAGGAGGCCGCTCCTTCTG
GGCTCGTTGTTGTGGCTGCTGCTCATGTGGGAACAGAGGGGACGATGACTGGGGACCTGAACCTTCTGGC
TCCAGAAGCAGAGGGACCAGCTCCCGGGGTAGGGACTCTCGGGGTGGCCGAAGACCCGAGTCTCGGGGCA
GTGGTGTAAATGCAGCTGGAGATGGCACCATCCGAGAGGGAATGCTGGTTGTGACTGGTGTGGATCTGCT
GTGCTCACGATCAGACCAGAACCGCCGAGAGCACCACACGGATGAGTTTGAATATGATGAGCTGATTGTG
CGCCGTGGGCAGCCCTTCCACATGATCCTTTTCTTGAACCGGGAATATGAGTCCTCTGATCGCATTGCCC
TTGAGCTCCTCATTGGAAGCAATCCGGAGGTGGGCAAGGGCACCCACGTGATCATCCCAGTGGGTAAGGG
AGGCAGTGGTGGCTGGAAGGCCCAAGTGACTAAGAACAACGGACACAACCTAAACCTACGCGTCCACACC
TCCCCCAATGCCATCATTGGCAAGTTTCAGTTCACTGTCCGCACCCGCTCTGAAGCTGGAGAGTTCCAGT
TGCCCTTTGACCCCCGCAATGAGATCTACATCCTCTTCAATCCCTGGTGCCCAGAGGACATAGTGTATGT
GGACCATGAGGACTGGCGGCAAGAATATGTGCTTAATGAGTCTGGAAGAATCTACTATGGAACAGAAGCA
CAGATTGGCGAACGAACCTGGAACTATGGTCAGTTTGACCATGGGGTGCTGGATGCCTGCCTGTACATCC
TGGATCGGAGGGGGATGCCATATGGAGGTCGTGGGGACCCAGTCAGTGTCTCTCGGGTTGTCTCTGCCAT
GGTGAACTCCCTGGATGACAATGGAGTTCTGATTGGGAACTGGACCGGTGACTACTCTCGAGGCACCAAC
CCCTCAGCGTGGGTGGGCAGTGTGGAGATCCTGCTCAGCTACCTACGCACCGGCTATTCCGTCCCCTACG
GCCAATGCTGGGTCTTTGCCGGTGTGACCACCACAGTGCTCCGATGTCTGGGCTTCGCTACCCGTACCGT
CACCAACTTCAACTCTGCACACGACACAGACACCTCCCTCACTATGGACATCTACTTTGATGAGAACATG
AAGCCACTTGAACATCTGAACCATGATTCTGTTTGGAACTTCCACGTGTGGAACGACTGCTGGATGAAGA
GGCCAGATCTGCCCTCAGGCTTTGATGGGTGGCAGGTTGTGGATGCCACACCCCAGGAGACCAGCAGTGG
CATCTTCTGCTGTGGCCCCTGTTCTGTGGAGTCCGTCAAGAATGGCTTAGTCTACATGAAGTATGACACA
CCTTTCATTTTTGCTGAGGTAAATAGCGATAAGGTATACTGGCAGCGGCAGGATGATGGCAGCTTTAAGA
TAGTGTACGTGGAAGAGAAAGCCATTGGCACACTCATTGTCACAAAGGCGATCCACTCCAACAATCGAGA
GGACATCACCCACATCTATAAGCACCCAGAAGGCTCAGAAGCAGAGCGGAGGGCTGTGGAGAAGGCGGCA
GCCCATGGCAGCAAACCTAATGTGTATGCCACCCGGGACTCCGCTGAGGATGTGGCAATGCAGGTGGAGG
CGCAGGACGCTGTGATGGGGCAGGATCTGGCTGTCTCTGTGGTGCTGACCAATCGTGGTAGTAGCCGACG
CACTGTGAAGTTGCACCTCTACCTTTGTGTCACCTACTACACTGGTGTCTCTGGGCCTACCTTCAAGGAG
GCCAAAAAGGAAGTGACATTAGCCCCAGGAGCCTCGGACTCTGTGACCATGCCTGTGGCCTACAAGGAAT
ACAAGCCCCACCTTGTGGACCAGGGGGCAATGTTGCTCAATGTCTCAGGCCATGTCAAGGAGAGTGGGCA
GGTACTAGCCAAGCAACACACCTTCCGTTTGCGCACCCCAGACCTTTCTCTTACGTTACTGGGAGCAGCA
GTTGTTGGTCAGGAATGTGGAGTACAGATCGTGTTCAAGAACCCCCTGCCTGTCACCCTCACCAACGTCG
TCTTCCGGCTCGAAGGTTCTGGATTACAGAGACCCAAGGTCCTCAATGTCGGGGACATCGGGGGTAATGA
GACAGTCACACTGCGCCAGACGTTTGTTCCCGTGCGACCAGGCCCCCGCCAGCTCATTGCCAGCCTGGAC
AGTCCACAGCTTTCCCAAGTGCACGGTGTTATTCAAGTGGATGTGGCCCCAGCCTCTGGAGGCAGCGGTT
TCTCAGATGCTGGAGGTGACAGTCGCTCTGGGGAGAACATACCTATGGCATATCGAGGTGGAGCTTAA

Translation (815 aa):
MEGPRSDVGRWGRSPWQPPTTPSPEPEPVPEPDRRSRSRRGGGRSFWARCCGCCSCGNRGDDDWGPEPSG
SRSRGTSSRGRDSRGGRRPESRGSGVNAAGDGTIREGMLVVTGVDLLCSRSDQNRREHHTDEFEYDELIV
RRGQPFHMILFLNREYESSDRIALELLIGSNPEVGKGTHVIIPVGKGGSGGWKAQVTKNNGHNLNLRVHT
SPNAIIGKFQFTVRTRSEAGEFQLPFDPRNEIYILFNPWCPEDIVYVDHEDWRQEYVLNESGRIYYGTEA
QIGERTWNYGQFDHGVLDACLYILDRRGMPYGGRGDPVSVSRVVSAMVNSLDDNGVLIGNWTGDYSRGTN
PSAWVGSVEILLSYLRTGYSVPYGQCWVFAGVTTTVLRCLGFATRTVTNFNSAHDTDTSLTMDIYFDENM
KPLEHLNHDSVWNFHVWNDCWMKRPDLPSGFDGWQVVDATPQETSSGIFCCGPCSVESVKNGLVYMKYDT
PFIFAEVNSDKVYWQRQDDGSFKIVYVEEKAIGTLIVTKAIHSNNREDITHIYKHPEGSEAERRAVEKAA
AHGSKPNVYATRDSAEDVAMQVEAQDAVMGQDLAVSVVLTNRGSSRRTVKLHLYLCVTYYTGVSGPTFKE
AKKEVTLAPGASDSVTMPVAYKEYKPHLVDQGAMLLNVSGHVKESGQVLAKQHTFRLRTPDLSLTLLGAA
VVGQECGVQIVFKNPLPVTLTNVVFRLEGSGLQRPKVLNVGDIGGNETVTLRQTFVPVRPGPRQLIASLD
SPQLSQVHGVIQVDVAPASGGSGFSDAGGDSRSGENIPMAYRGGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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