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Report for CCDS3688.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3688.3 Public Homo sapiens 4 LRIT3 24 110 108 CCDS HistoryNCBI Gene:345193Re-query CCDS DB by CCDS ID:3688.3Re-query CCDS DB by GeneID:345193See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3688.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. The update adds a predicted N-terminal signal peptide to the protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3688.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000594814.6 ENSP00000469759.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000594814.6Link to Ensembl Protein Viewer:ENSP00000469759.1Re-query CCDS DB by Nucleotide ID:ENST00000594814Re-query CCDS DB by Protein ID:ENSP00000469759
Original member Current member NCBI NM_198506.5 NP_940908.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198506.5Link to Protein Sequence:NP_940908.3Re-query CCDS DB by Nucleotide ID:NM_198506Re-query CCDS DB by Protein ID:NP_940908Link to BLAST:NP_940908.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940908.3 679 Q3SXY7-1 679 100% 0 0

Chromosomal Locations for CCDS 3688.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109848202 109848317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109851504 109851976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109867641 109867946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109869645 109870789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGCATCTCTTTGCATGTCTGTGCATTGTCCTTAGCTTTTTGGAAGGAGTGGGCTGTTTGTGTCCTTCAC
AGTGCACCTGTGATTATCACGGCAGAAATGACGGCTCAGGATCAAGGTTGGTGCTATGTAATGACATGGA
TATGAACGAGCTGCCTACGAACCTCCCCGTGGACACTGTGAAGCTTCGCATAGAGAAGACTGTCATCCGC
AGAATCTCTGCGGAGGCCTTCTATTACCTGGTGGAGCTCCAGTATCTCTGGGTGACTTACAATTCCGTGG
CCAGCATTGACCCCAGCAGCTTTTACAACCTGAAGCAACTGCATGAGTTGCGCTTGGATGGGAATTCTCT
GGCTGCTTTCCCTTGGGCATCTCTGCTGGACATGCCCCTTCTGAGGACCCTGGACTTGCACAATAACAAA
ATAACCAGTGTGCCAAATGAGGCGCTCAGGTATCTGAAGAACCTTGCCTACTTGGATTTATCAAGCAACA
GACTCACCACATTGCCACCAGATTTCCTGGAGAGCTGGACTCATTTAGTTTCAACACCTTCTGGAGTCCT
GGACCTTTCCCCAAGCAGGATTATTCTTGGTCTACAGGACAATCCTTGGTTCTGTGACTGTCATATTTCC
AAAATGATTGAGTTGTCAAAGGTCGTTGACCCTGCTATAGTGCTTCTGGATCCACTGATGACTTGCAGTG
AACCTGAGCGCCTCACAGGAATTTTGTTTCAGCGGGCTGAATTGGAGCATTGTCTGAAACCATCAGTGAT
GACCTCAGCCACCAAAATCATGTCTGCTCTGGGCAGTAATGTTCTACTGCGGTGTGATGCCACTGGCTTC
CCCACCCCACAGATCACATGGACCAGATCTGACAGCTCGCCAGTTAATTATACAGTAATACAAGAATCTC
CAGAGGAAGGAGTCAGATGGTCCATAATGAGCTTGACAGGCATTTCTTCCAAAGACGCTGGGGATTACAA
ATGTAAGGCCAAAAATCTGGCTGGGATGTCAGAAGCTGTGGTTACTGTGACAGTGCTTGGCATTACCACA
ACTCCAATACCACCAGACACTTCTGAAAGAACTGGAGATCATCCTGAGTGGGATGTCCAGCCGGGATCTG
GAAGATCTACATCTGTATCTAGCGCATCATCATATCTTTGGTCCTCTTCCTTCTCCCCCACATCTTCTTT
TTCTGCTTCTACTTTGTCTCCTCCCTCTACTGCTTCCTTCTCTTTATCTCCTTTCTCCTCCTCCACTGTT
TCTTCAACCACAACTCTGAGCACAAGCATCTCAGCAAGTACCACCATGGCCAACAAGCGATCATTCCAGC
TCCACCAAGGTGGGAAAAGAAATTTAAAGGTGGCAAAGAATGGAAGTAAGCTTCCTCCAGCCAGCACAAG
TAAGAAAGAAGAGCTGGCATTGTTGGATCAAACAATGCTTACGGAGACAAATGCCGCAATAGAAAACCTC
AGGGTGGTCAGTGAGACTAAAGAGAGTGTGACATTGACGTGGAATATGATCAACACCACACATAACTCTG
CAGTGACTGTGTTGTATTCCAAGTATGGTGGGAAGGACCTGCTGCTGTTGAATGCAGACTCCAGCAAGAA
CCAAGTAACCATAGATGGCTTGGAACCCGGTGGGCAATACATGGCCTGTGTCTGTCCAAAAGGAGTGCCT
CCCCAGAAAGACCAATGCATCACCTTTTCTACTGAAAGAGTTGAAGGAGATGATTCTCAATGGTCTCTCC
TTCTCGTGGTGACCAGTACTGCCTGTGTTGTTATCTTACCATTGATTTGTTTCTTGTTGTACAAAGTTTG
CAAACTGCAATGTAAATCAGAACCTTTTTGGGAAGATGATTTGGCAAAGGAGACTTATATCCAATTTGAG
ACCCTGTTTCCCAGGTCTCAAAGTGTAGGTGAGCTCTGGACACGAAGCCACAGGGATGACTCAGAGAAAT
TGCTGCTTTGTTCTAGGTCAAGTGTGGAATCTCAGGTGACTTTTAAAAGTGAAGGTTCCAGACCAGAGTA
TTATTGCTAA

Translation (679 aa):
MHLFACLCIVLSFLEGVGCLCPSQCTCDYHGRNDGSGSRLVLCNDMDMNELPTNLPVDTVKLRIEKTVIR
RISAEAFYYLVELQYLWVTYNSVASIDPSSFYNLKQLHELRLDGNSLAAFPWASLLDMPLLRTLDLHNNK
ITSVPNEALRYLKNLAYLDLSSNRLTTLPPDFLESWTHLVSTPSGVLDLSPSRIILGLQDNPWFCDCHIS
KMIELSKVVDPAIVLLDPLMTCSEPERLTGILFQRAELEHCLKPSVMTSATKIMSALGSNVLLRCDATGF
PTPQITWTRSDSSPVNYTVIQESPEEGVRWSIMSLTGISSKDAGDYKCKAKNLAGMSEAVVTVTVLGITT
TPIPPDTSERTGDHPEWDVQPGSGRSTSVSSASSYLWSSSFSPTSSFSASTLSPPSTASFSLSPFSSSTV
SSTTTLSTSISASTTMANKRSFQLHQGGKRNLKVAKNGSKLPPASTSKKEELALLDQTMLTETNAAIENL
RVVSETKESVTLTWNMINTTHNSAVTVLYSKYGGKDLLLLNADSSKNQVTIDGLEPGGQYMACVCPKGVP
PQKDQCITFSTERVEGDDSQWSLLLVVTSTACVVILPLICFLLYKVCKLQCKSEPFWEDDLAKETYIQFE
TLFPRSQSVGELWTRSHRDDSEKLLLCSRSSVESQVTFKSEGSRPEYYC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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