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Report for CCDS36866.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36866.2 Public Mus musculus 14 Ogdhl 23 108 98 CCDS HistoryNCBI Gene:239017Re-query CCDS DB by CCDS ID:36866.2Re-query CCDS DB by GeneID:239017See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 36866.1
The splice structure of this coding region was not supported, so it was modified to a better supported splice structure. The exon structure of the 5' UTR of the transcript containing this coding region is inferred based on partial transcripts and RNA-seq data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36866.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228529.1 ENSMUSP00000154185.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228529.1Link to Ensembl Protein Viewer:ENSMUSP00000154185.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228529Re-query CCDS DB by Protein ID:ENSMUSP00000154185
Original member Current member NCBI NM_001081130.2 NP_001074599.2 Accepted alive Link to Nucleotide Sequence:NM_001081130.2Link to Protein Sequence:NP_001074599.2Re-query CCDS DB by Nucleotide ID:NM_001081130Re-query CCDS DB by Protein ID:NP_001074599Link to BLAST:NP_001074599.2

Chromosomal Locations for CCDS 36866.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32325795 32325998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32326979 32327149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32332181 32332283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32332486 32332601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32332748 32332902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32333710 32333856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32335335 32335425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32337442 32337621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32337755 32337883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32339207 32339386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32339903 32340055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32340645 32340747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32341202 32341330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32342040 32342190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32343203 32343330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32344324 32344502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32344714 32344785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32344883 32345008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32345110 32345182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32346398 32346561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32346699 32346853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32347506 32347629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3033 nt):
ATGAGCCAGCTGAGGCTGCTGCCATTCCGGCTGGGGCCACGGGCCACCAAGCTCCTGGCCACACGGGCTA
TCCCGGTGTTCAGTGGGTGCAGGAGGTCTTCTGGACCACCAACGACCATCCCGAGGAGCAGAAGCGGAGT
CAGCTCCAGTTATGTGGAAGAGATGTACTTTGCCTGGTTGGAAAACCCACAGAGCGTTCACAAGTCCTGG
GACAGCTTTTTTCAGAGAGCAAGTAAGGAGGCCTCTGTGGGTCCTGCTCAGCCGCAGCTCCCAGCTGTTC
TCCAAGAAAGCAGGACATCAGTGTCAAGCTGCACCAAGACCAGCAAGCTGGTGGAAGACCACTTGGCAGT
CCAGTCCCTGATCCGGGCCTACCAGATCCGAGGCCACCATGTGGCCCAGCTGGACCCCCTGGGCATCCTG
GATGCAGACCTAGATTCCTTTGTGCCCTCTGACTTGATCACAACCATTGATAAATTGGCCTTCTATGACC
TGCAGGAGGCTGATCTGGATAAGGAGTTCCGGCTGCCCACCACGACTTTCATCGGGGGCCCAGAGAACAC
ACTCTCTCTTCGAGAGATCATACGTCGCTTGGAGAGCACCTACTGCCAGCATATTGGCCTGGAGTTCATG
TTTATTAATGACGTGGAACAGTGCCAGTGGATCAGACAGAAATTTGAAACTCCTGGCGTGATGCAGTTTT
CCGTCGAGGAGAAGAGGACCCTGCTGGCTAGACTGGTGCGCTCCATGAGGTTTGAAGACTTCCTGGCCAG
GAAGTGGTCTTCGGAGAAGCGGTTTGGCCTGGAAGGCTGCGAGGTCATGATTCCTGCTCTCAAGACCATT
ATCGACAAGTCTAGTGAGATGGGGATTGAGAACGTCATCCTGGGGATGCCACACAGGGGCAGGCTGAATG
TGCTGGCTAACGTGATCCGCAAGGACCTGGAACAGATCTTCTGTCAGTTTGATCCCAAGCTGGAAGCAGC
AGATGAGGGCTCTGGTGATGTCAAATACCATCTGGGCATGTACCACGAGAGGATCAACCGTGTCACCAAC
AGGAACATCACATTGTCACTGGTAGCCAACCCTTCCCATCTAGAAGCTGTGGACCCCGTGGTACAGGGCA
AGACGAAGGCAGAGCAGTTCTACCGTGGGGATGCCCAGGGTAGGAAGGTCATGTCTATCCTGGTCCATGG
GGATGCCGCCTTCGCTGGCCAGGGGGTCGTCTATGAGACCTTCCATCTCAGTGACCTGCCTTCTTATACC
ACCAATGGCACAGTGCACGTTGTGGTCAACAACCAGATCGGCTTCACCACAGATCCCCGAATGGCTCGCT
CCTCCCCTTACCCCACTGATGTGGCGCGGGTGGTCAATGCACCCATCTTCCATGTGAACGCAGACGACCC
AGAGGCTGTGATCTATGTGTGCAGTGTGGCAGCTGAGTGGAGGAACACCTTCAACAAAGATGTTGTTGTA
GACCTGGTCTGTTACCGCCGGCGTGGTCACAATGAGATGGACGAGCCCATGTTCACGCAGCCACTCATGT
ACAAGCAGATCCACAAGCAGGTACCCGTGCTGAAGAAGTATGCAGACAAGCTCATCGCCGAGGGCACCGT
CACTCTGCAGGAGTTTGAGGAGGAAATTGCCAAATATGACCGTATCTGTGAGGAGGCCTACGGCAGGTCC
AAGGATAAGAAGATCCTGCATATAAAGCACTGGCTGGACTCCCCCTGGCCTGGCTTCTTCAATGTGGATG
GGGAGCCCAAGAGCATGACATGCCCTACGACAGGCATCCCTGAGGAGATGCTGACCCACATTGGCAGTGT
GGCCAGCTCTGTGCCCCTGGAGGACTTTAAGATCCACACAGGCCTCTCTCGCATCCTGCGTGGCCGTGCA
GACATGACAAAGAAGCGCACAGTGGACTGGGCCCTGGCAGAGTACATGGCCTTTGGTTCATTGCTGAAGG
AGGGCATCCACGTGCGACTCAGCGGCCAGGATGTGGAGAGGGGCACATTCAGCCACCGGCACCATGTTCT
TCATGACCAGGAAGTTGACCGGAGGACGTGTGTCCCGATGAATCATCTGTGGCCTGACCAGGCCCCGTAC
ACTGTGTGCAATAGCTCCCTCTCAGAGTATGGAGTTCTAGGCTTTGAGCTGGGCTATGCCATGGCCAGCC
CCAACGCCCTGGTCCTCTGGGAAGCTCAGTTTGGTGATTTCCACAACACAGCCCAGTGTATCATCGACCA
GTTCATCAGCACTGGCCAGGCCAAGTGGGTGCGGCACAATGGCATCGTGCTTCTGCTGCCCCACGGCATG
GAGGGCATGGGTCCAGAGCACTCCTCAGCAAGGCCAGAGAGGTTCCTGCAGATGAGCAATGACGACTCGG
ATGCCTACCCAGTGTTCACTGAGGACTTTGAGGTGAGCCAGCTCTACGACTGCAACTGGATTGTGGTGAA
CTGCTCCACCCCAGCCAGCTACTTCCACGTGCTGCGCCGACAGATCCTGCTGCCCTTCCGCAAGCCTCTC
ATTGTCTTCACACCCAAGTCTCTGCTGAGGCACCCTGATGCCAAGTCCAGCTTTGACCAGATGGTGTCCG
GAACTAGCTTCCAGCGGCTGATTCCGGAAGACGGCCCCGCAGCACATTCTCCTGAGCAGGTCCAGCGGCT
CATCTTCTGCACGGGAAAGGTGTACTATGACCTGGTAAAGGAACGCAGCAGCCAGGGCCTGGAGCAACAA
GTGGCCATCACACGCCTGGAGCAGATCTCTCCGTTTCCTTTCGACCTGATCATGCGGGAGGCAGAGAAGT
ACTCGGGAGCTGAGCTGGTGTGGTGTCAGGAGGAACATAAGAACATGGGCTATTACGACTACATCAGTCC
ACGCTTCATGACTCTCCTCGGCCACTCCCGGCCCATATGGTATGTCGGCCGGGACCCAGCAGCCGCACCA
GCCACTGGGAATAAGAACGCTCACTTGGTGTCACTGAGGAGGTTTCTGGATACTGCCTTCAATCTGAAGG
CCTTCGAGGGCAAGACATTTTAG

Translation (1010 aa):
MSQLRLLPFRLGPRATKLLATRAIPVFSGCRRSSGPPTTIPRSRSGVSSSYVEEMYFAWLENPQSVHKSW
DSFFQRASKEASVGPAQPQLPAVLQESRTSVSSCTKTSKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGIL
DADLDSFVPSDLITTIDKLAFYDLQEADLDKEFRLPTTTFIGGPENTLSLREIIRRLESTYCQHIGLEFM
FINDVEQCQWIRQKFETPGVMQFSVEEKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTI
IDKSSEMGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAADEGSGDVKYHLGMYHERINRVTN
RNITLSLVANPSHLEAVDPVVQGKTKAEQFYRGDAQGRKVMSILVHGDAAFAGQGVVYETFHLSDLPSYT
TNGTVHVVVNNQIGFTTDPRMARSSPYPTDVARVVNAPIFHVNADDPEAVIYVCSVAAEWRNTFNKDVVV
DLVCYRRRGHNEMDEPMFTQPLMYKQIHKQVPVLKKYADKLIAEGTVTLQEFEEEIAKYDRICEEAYGRS
KDKKILHIKHWLDSPWPGFFNVDGEPKSMTCPTTGIPEEMLTHIGSVASSVPLEDFKIHTGLSRILRGRA
DMTKKRTVDWALAEYMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDRRTCVPMNHLWPDQAPY
TVCNSSLSEYGVLGFELGYAMASPNALVLWEAQFGDFHNTAQCIIDQFISTGQAKWVRHNGIVLLLPHGM
EGMGPEHSSARPERFLQMSNDDSDAYPVFTEDFEVSQLYDCNWIVVNCSTPASYFHVLRRQILLPFRKPL
IVFTPKSLLRHPDAKSSFDQMVSGTSFQRLIPEDGPAAHSPEQVQRLIFCTGKVYYDLVKERSSQGLEQQ
VAITRLEQISPFPFDLIMREAEKYSGAELVWCQEEHKNMGYYDYISPRFMTLLGHSRPIWYVGRDPAAAP
ATGNKNAHLVSLRRFLDTAFNLKAFEGKTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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