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Report for CCDS36409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36409.1 Public Mus musculus 12 E2f6 23 108 98 CCDS HistoryNCBI Gene:50496Re-query CCDS DB by CCDS ID:36409.1Re-query CCDS DB by GeneID:50496See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020908.8 ENSMUSP00000020908.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020908.8Link to Ensembl Protein Viewer:ENSMUSP00000020908.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020908Re-query CCDS DB by Protein ID:ENSMUSP00000020908
Original member Current member NCBI NM_033270.2 NP_150373.2 Accepted alive Link to Nucleotide Sequence:NM_033270.2Link to Protein Sequence:NP_150373.2Re-query CCDS DB by Nucleotide ID:NM_033270Re-query CCDS DB by Protein ID:NP_150373Link to BLAST:NP_150373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150373.2 272 O54917 272 100% 0 0

Chromosomal Locations for CCDS 36409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16811208 16811315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16816400 16816454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16818841 16819057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16820229 16820384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16822093 16822207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16824570 16824717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16825365 16825384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGAGTCAGCAGCGGACGGCGCGGAGACAGCCCAGCCTGCTGGTGGACCCGGCGCAGGAAACGGTGCGCC
GGCGTTGCCGAGACCCCATCAACGTGGAAAACCTACTGCCATCAAAAATAAGGATTAATCTAGAAGAAAA
TGTACAGTATGTGTCCATGAGAAAAGCTCTGAAAGTGAAGAGGCCCCGGTTTGATGTGTCACTGGTATAC
TTAACTCGGAAGTTTATGGATCTCGTCAGATCTGCCCCTGGGGGCATTCTTGACTTAAACAAAGTTGCCA
CAAAACTGGGTGTTCGGAAGAGGCGAGTGTATGACATCACCAATGTCTTGGATGGCATCGAACTGGTGGA
AAAGAAATCTAAGAACCACATTCGGTGGATAGGATCTGACCTGAACAACTTTGGGGCCGCACCCCAGCAG
AAGAAGCTGCAGGCAGAACTCTCCGACCTGTCGGCCATGGAAGACGCCTTGGACGAGTTGATTAAAGATT
GTGCTCAGCAACTGTTGGAGTTAACAGATGACAAGGAAAATGAAAGACTAGCGTATGTAACCTATCAGGA
TATTCACGGCATTCAAGCTTTCCATGAACAGATTGTCATTGCAGTGAAGGCTCCAGAGGAAACCAGACTG
GATGTTCCAGCTCCCAGAGAAGATTCTATCACAGTACATATTAGGAGCACCAAAGGACCCATTGATGTAT
ATTTGTGTGAAGTAGAACAGAACCATTCAAATGGTAAAACCAATGATGGAATAGGAGCCTCTCCATCTAA
AAGCAGCCATCCACAATGCCCAGAGAAAGAAGACGAGCCTCCTCAGTGA

Translation (272 aa):
MSQQRTARRQPSLLVDPAQETVRRRCRDPINVENLLPSKIRINLEENVQYVSMRKALKVKRPRFDVSLVY
LTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIELVEKKSKNHIRWIGSDLNNFGAAPQQ
KKLQAELSDLSAMEDALDELIKDCAQQLLELTDDKENERLAYVTYQDIHGIQAFHEQIVIAVKAPEETRL
DVPAPREDSITVHIRSTKGPIDVYLCEVEQNHSNGKTNDGIGASPSKSSHPQCPEKEDEPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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