NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36200.1 Public Mus musculus 11 Ybx2 23 108 98 CCDS HistoryNCBI Gene:53422Re-query CCDS DB by CCDS ID:36200.1Re-query CCDS DB by GeneID:53422See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018698.11 ENSMUSP00000018698.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018698.11Link to Ensembl Protein Viewer:ENSMUSP00000018698.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000018698Re-query CCDS DB by Protein ID:ENSMUSP00000018698
Original member NCBI NM_016875.3 NP_058571.2 Updated not alive Link to Nucleotide Sequence:NM_016875.3Link to Protein Sequence:NP_058571.2Re-query CCDS DB by Nucleotide ID:NM_016875Re-query CCDS DB by Protein ID:NP_058571
Current member NCBI NM_016875.4 NP_058571.2 Accepted alive Link to Nucleotide Sequence:NM_016875.4Link to Protein Sequence:NP_058571.2Re-query CCDS DB by Nucleotide ID:NM_016875Re-query CCDS DB by Protein ID:NP_058571Link to BLAST:NP_058571.2

Chromosomal Locations for CCDS 36200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69935975 69936248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69936897 69936960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69938342 69938375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69939238 69939327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69939874 69940158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69940328 69940431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69940590 69940767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69941046 69941096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAGCGAGGCGGAGGCGTCAGTGGTGGCGACAGCGGCCCCCGCGGCGACGGTGCCCGCGACGGCGGCGG
GGGTGGTAGCGGTGGTGGTACCGGTGCCCGCGGGAGAGCCGCAGAAAGCAGGCGGCGGGGCGGGCGGCGG
GGGCGGAGCCGCCTCTGGCCCCGCTGCTGGGACCCCCTCAGCGCCCGGCCCTCGCACCCCTGGCAACCAG
GCGACGGCGGCCTCGGGGACTCCCGCGCCCCCGGCCCGGAGTCAGGCGGACAAGCCGGTGCTGGCAATCC
AAGTCCTGGGCACAGTCAAATGGTTCAACGTCCGGAATGGTTACGGATTCATCAACAGGAATGACACCAA
GGAGGATGTCTTTGTTCACCAGACAGCTATTAAGAGAAACAACCCCAGGAAGTTTCTGCGGAGTGTTGGA
GATGGGGAGACTGTGGAGTTTGATGTCGTGGAAGGAGAGAAGGGTGCAGAAGCTGCTAATGTCACTGGGC
CTGGGGGGGTACCAGTGAAGGGCAGCCGCTATGCCCCTAATCGACGTAGGTTCCGGAGGTTCATTCCTCG
GCCTCGCCCAGCTGCCCCACCACCTATGGTGGCAGAGGCTCCCTCAGGTGGGACAGAACCTGGCAGCGAA
GGGGAGCGGGCAGAGGACTCGGGGCAGCGACCTAGACGACGGCGCCCACCACCCTTCTTCTATCGAAGGC
GGTTTGTGCGAGGCCCTCGGCCCCCCAACCAGCAACAGCCCATAGAGGGCTCTGATGGGGTAGAACCCAA
GGAGACAGCACCATTGGAGGGTGATCAACAGCAGGGAGATGAACGGGTGCCCCCACCCAGATTCCGGCCC
AGGTACCGAAGGCCTTTCCGCCCCAGGCCACCCCAACAGCCTACCACAGAAGGTGGGGATGGAGAGACCA
AGCCCAGCCAAGGCCCCACTGATGGCTCCCGGCCTGAGCCCCAGCGTCCACGAAACCGTCCCTACTTCCA
GCGGCGTCGGCAGCAGCCCCCTGGCCCCCGGCAGCCTATAGCCGCAGAGACCTCCGCGCCTATCAACAGT
GGGGACCCCCCCACCACCATACTGGAGTGA

Translation (359 aa):
MSEAEASVVATAAPAATVPATAAGVVAVVVPVPAGEPQKAGGGAGGGGGAASGPAAGTPSAPGPRTPGNQ
ATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVG
DGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYAPNRRRFRRFIPRPRPAAPPPMVAEAPSGGTEPGSE
GERAEDSGQRPRRRRPPPFFYRRRFVRGPRPPNQQQPIEGSDGVEPKETAPLEGDQQQGDERVPPPRFRP
RYRRPFRPRPPQQPTTEGGDGETKPSQGPTDGSRPEPQRPRNRPYFQRRRQQPPGPRQPIAAETSAPINS
GDPPTTILE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH