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Report for CCDS36190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36190.1 Public Mus musculus 11 Borcs6 23 108 98 CCDS HistoryNCBI Gene:71923Re-query CCDS DB by CCDS ID:36190.1Re-query CCDS DB by GeneID:71923See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051888.3 ENSMUSP00000059143.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051888.3Link to Ensembl Protein Viewer:ENSMUSP00000059143.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051888Re-query CCDS DB by Protein ID:ENSMUSP00000059143
Original member Current member NCBI NM_028005.3 NP_082281.2 Accepted alive Link to Nucleotide Sequence:NM_028005.3Link to Protein Sequence:NP_082281.2Re-query CCDS DB by Nucleotide ID:NM_028005Re-query CCDS DB by Protein ID:NP_082281Link to BLAST:NP_082281.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082281.2 360 Q9D6W8 360 100% 0 0

Chromosomal Locations for CCDS 36190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69059798 69060880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGAGGCCGCCCAGGGGCGGCTCGGGCCGGAGCCGGAGCTTTCGGTCGGAGCTGAGCACCAGGCCGCGA
CTTTCAGCGGCAGGCCGTCCCGAACGCCCTCGAAGCCGCCCTCAGTCCGGACGCTGTCCGGGGAGGAAGA
GGCTGAGAGCGTTGGGGTCTCGAGCCGTCATCCCCGAGCGTCCCCAAAGACTTGGAGCGGCAGCATCGCC
CATGGGCCGGAGCTGGACACTTGGGAGGACAAGCCGAGCTCCCGGGCGACGCCGTCAGGGGCCCGGGGAC
GCCGGGGGGTGCCAGGTTCCGAGCACGCCCCGCCCCCGTCCTCCTGGTACCCGGAGCCGGAGCCCAGCGA
GGATCAGCCCTCCGCTCTGAGGGTCTGCCGTCGAGGGAGCCCCGGAGGCGTCGAGATGAATGTGGAGCTG
CCGCAGCAAGAGGGTGACGACGACGACGACGAGGACGAAGAGGCGGCGGCGGGTAGGGCTGGCCGCTCCT
TCCCCAGCCGCCTTCAGGACAGCCGCAGCCTGGACGGGCTGAGTGGGGCGTGCGGTGGAGGGGGGTCTTC
ATCCAGTGGCGAGACCGGCGCGGGCGGAGGACGTCGCGCCACTATCTCCAGCCCCCTAGAGCTGGAGGGC
ACGGTGAGCCGCCACGGCGACCTTACTCACTTTGTGGCCAACAACCTACAACTCAAGATCCGACTGAGTG
GCGCCCCACCACCCGTTCCCCCTGCCTCTGTGCGGCCCTGCCTAACGCCCGCACCCACCCCCACCATCCC
TCCCATCGACCCGGACGTGCTGAGGGATCTGGAGCGGCTGAGTCGCGAGCTGGGCGGCCGGGTAGACCGT
CTGCTTCGCGGGCTGGGTGGTGCGGTGCAAGAGCTGACAGCGTTGAGTGTGGGCTGTATCCAGACCTACC
GCGACGCGGTGGACTCCTTAGGTGAAGCCGTGGACATGAGCATTAAGGGCATGTACACCTTACTTGCGCG
CTGCGAGGAGCTGGAACGGGCTTTGCAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGATATCCGACGC
ACGCTGGAGGTGTTGGAGGCCCTATGCAAGTGA

Translation (360 aa):
MEAAQGRLGPEPELSVGAEHQAATFSGRPSRTPSKPPSVRTLSGEEEAESVGVSSRHPRASPKTWSGSIA
HGPELDTWEDKPSSRATPSGARGRRGVPGSEHAPPPSSWYPEPEPSEDQPSALRVCRRGSPGGVEMNVEL
PQQEGDDDDDEDEEAAAGRAGRSFPSRLQDSRSLDGLSGACGGGGSSSSGETGAGGGRRATISSPLELEG
TVSRHGDLTHFVANNLQLKIRLSGAPPPVPPASVRPCLTPAPTPTIPPIDPDVLRDLERLSRELGGRVDR
LLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRR
TLEVLEALCK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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