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Report for CCDS36183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36183.1 Public Mus musculus 11 Sco1 23 108 98 CCDS HistoryNCBI Gene:52892Re-query CCDS DB by CCDS ID:36183.1Re-query CCDS DB by GeneID:52892See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36183.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092996.4 ENSMUSP00000090673.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092996.4Link to Ensembl Protein Viewer:ENSMUSP00000090673.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092996Re-query CCDS DB by Protein ID:ENSMUSP00000090673
Original member Current member NCBI NM_001040026.1 NP_001035115.1 Accepted alive Link to Nucleotide Sequence:NM_001040026.1Link to Protein Sequence:NP_001035115.1Re-query CCDS DB by Nucleotide ID:NM_001040026Re-query CCDS DB by Protein ID:NP_001035115Link to BLAST:NP_001035115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035115.1 284 Q5SUC9 284 100% 0 0

Chromosomal Locations for CCDS 36183.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67052695 67052916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67053775 67053865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67055731 67055928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67056515 67056607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67058327 67058442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67063906 67064040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCAGCACTTGTACGCGCCGCAGTGGTGAGGTCGCAGTGTCGCCAGCTCTGGCGTCTGTTCCCTCGCG
GCCATGGGCTCAGGGATGTGGCGGAGAGGCCGAGACCGGAGGAAGCGTGCTCCTGCCTGCGGAGCAGAGC
CTTCAGCGCTGGGCCGCCACCGCCGGGGGCCGGTCCGGAGCCCAAGGGCGGTCAAGCCGGGTCTCACCGC
CCGAAGCCTGGGCCTGTTTCTTGGAAGTCTTTAGCTCTCACCTTTGCCATTGGAGGCTCTTTATTGGCTG
GAATGAAGTACTTCAAGAAAGAAAAGATAGAAAAGCTGGAGAAACAACGGCATCGCAGCATTGGGAAGCC
TTTACTAGGGGGGCCATTTTCCCTTACAACTCACAATGGAGAGCCCAAAACCGACAAGGACTACCTGGGT
CAATGGGTATTGATTTATTTTGGCTTCACTCATTGCCCTGATATCTGTCCAGAAGAACTAGAAAAAATGA
TTGAAGTCGTGGAGGAGATAGACAGTATTCCATCCCTGCCAAATTTAACTCCACTTTTCATCACCATTGA
CCCAGAAAGGGACACCAAAGAAGCCATTGCGACTTATGTGAAAGAATTTTCTCCCAAATTGGTTGGTTTG
ACTGGCACAAAAGAAGAGATTGATGGAGTGGCCAGAGCATACAGGGTGTATTACAGCCCTGGCCCGAAGG
ATGAGGATGAAGACTACATAGTGGATCATACAATAATAATGTACTTGATTGGACCAGATGGAGAATTTCT
TGATTATTTTGGACAAAACAAGAAGAAGGCAGAAATAGCCGGCTCAATTGCTGCACACATGAGGTCACAC
ATGAAGAAGAGGTAG

Translation (284 aa):
MAALVRAAVVRSQCRQLWRLFPRGHGLRDVAERPRPEEACSCLRSRAFSAGPPPPGAGPEPKGGQAGSHR
PKPGPVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEKQRHRSIGKPLLGGPFSLTTHNGEPKTDKDYLG
QWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSLPNLTPLFITIDPERDTKEAIATYVKEFSPKLVGL
TGTKEEIDGVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKKKAEIAGSIAAHMRSH
MKKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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