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Report for CCDS36061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36061.1 Public Mus musculus 10 Tph2 23 108 98 CCDS HistoryNCBI Gene:216343Re-query CCDS DB by CCDS ID:36061.1Re-query CCDS DB by GeneID:216343See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006949.8 ENSMUSP00000006949.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006949.8Link to Ensembl Protein Viewer:ENSMUSP00000006949.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006949Re-query CCDS DB by Protein ID:ENSMUSP00000006949
Original member Current member NCBI NM_173391.3 NP_775567.2 Accepted alive Link to Nucleotide Sequence:NM_173391.3Link to Protein Sequence:NP_775567.2Re-query CCDS DB by Nucleotide ID:NM_173391Re-query CCDS DB by Protein ID:NP_775567Link to BLAST:NP_775567.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775567.2 488 Q8CGV2 488 100% 0 0

Chromosomal Locations for CCDS 36061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 115079667 115079841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115079975 115080108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115090702 115090797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115119825 115119951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115145991 115146126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115151085 115151281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115174052 115174119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115179322 115179422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115179523 115179706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115182756 115182899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115184785 115184889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGCAGCCCGCAATGATGATGTTTTCCAGTAAATACTGGGCCAGGAGAGGGTTGTCCTTGGATTCTGCTG
TGCCAGAAGATCATCAGCTACTTGGCAGCTTAACACAAAATAAGGCTATCAAAAGCGAGGACAAGAAAAG
CGGCAAAGAGCCCGGCAAAGGCGACACCACAGAGAGCAGCAAGACAGCGGTAGTGTTCTCCTTGAAGAAT
GAAGTTGGTGGGCTGGTGAAAGCACTTAGACTATTCCAGGAAAAACATGTCAACATGCTTCATATCGAAT
CCAGGAGGTCCCGACGAAGAAGTTCTGAAGTCGAAATCTTCGTGGACTGCGAATGTGGCAAAACGGAATT
CAATGAGCTCATCCAGTTGCTGAAATTTCAGACCACCATTGTGACCCTGAATCCGCCTGAGAGCATTTGG
ACGGAGGAAGAAGATCTCGAGGATGTGCCGTGGTTCCCTCGGAAGATCTCTGAGTTAGACAGATGCTCTC
ACCGAGTCCTCATGTACGGCACCGAGCTTGATGCCGACCATCCAGGATTTAAGGACAATGTCTATCGACA
GAGGAGGAAGTATTTTGTGGATGTGGCCATGGGCTATAAATATGGTCAGCCCATTCCCAGGGTCGAGTAC
ACAGAAGAAGAGACTAAAACTTGGGGTGTTGTGTTCCGGGAGCTCTCCAAACTCTACCCGACTCATGCTT
GCCGGGAGTACCTGAAAAACCTCCCCCTGCTGACCAAGTACTGTGGCTACAGGGAAGACAACGTGCCGCA
ACTGGAAGACGTCTCCATGTTTCTGAAAGAGCGATCTGGCTTCACAGTGAGACCAGTGGCTGGCTACCTG
AGCCCAAGAGACTTCCTGGCGGGCCTGGCCTACAGAGTATTCCACTGCACCCAGTACGTGCGGCATGGCT
CCGACCCCCTCTACACCCCGGAACCAGATACATGCCATGAACTCTTGGGACACGTGCCACTGCTTGCGGA
TCCCAAGTTTGCTCAGTTTTCCCAAGAGATAGGCTTAGCGTCTCTGGGAGCCTCAGATGAGGACGTTCAG
AAACTAGCCACGTGCTATTTCTTCACAATCGAGTTCGGCCTTTGCAAGCAAGAGGGTCAACTGCGGGCGT
ATGGAGCAGGGTTACTTTCGTCCATCGGAGAATTGAAGCATGCTCTTTCCGACAAGGCGTGTGTGAAATC
CTTTGACCCAAAGACGACCTGCTTGCAGGAATGCCTAATCACCACCTTTCAGGACGCTTACTTTGTTTCG
GACAGTTTTGAAGAAGCCAAAGAAAAGATGAGGGACTTTGCAAAGTCAATTACCCGTCCCTTCTCGGTAT
ACTTCAACCCCTACACGCAGAGCATTGAAATTCTGAAAGACACCAGAAGTATTGAGAATGTGGTGCAGGA
CCTGCGCAGTGATTTGAACACAGTGTGTGATGCCTTGAATAAAATGAACCAATATCTGGGGATTTGA

Translation (488 aa):
MQPAMMMFSSKYWARRGLSLDSAVPEDHQLLGSLTQNKAIKSEDKKSGKEPGKGDTTESSKTAVVFSLKN
EVGGLVKALRLFQEKHVNMLHIESRRSRRRSSEVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPESIW
TEEEDLEDVPWFPRKISELDRCSHRVLMYGTELDADHPGFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEY
TEEETKTWGVVFRELSKLYPTHACREYLKNLPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYL
SPRDFLAGLAYRVFHCTQYVRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQ
KLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKSFDPKTTCLQECLITTFQDAYFVS
DSFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKMNQYLGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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