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Report for CCDS35970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35970.1 Public Mus musculus 10 Ptbp1 23 108 98 CCDS HistoryNCBI Gene:19205Re-query CCDS DB by CCDS ID:35970.1Re-query CCDS DB by GeneID:19205See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165704.7 ENSMUSP00000127783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165704.7Link to Ensembl Protein Viewer:ENSMUSP00000127783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165704Re-query CCDS DB by Protein ID:ENSMUSP00000127783
Original member NCBI NM_008956.3 NP_032982.2 Updated not alive Link to Nucleotide Sequence:NM_008956.3Link to Protein Sequence:NP_032982.2Re-query CCDS DB by Nucleotide ID:NM_008956Re-query CCDS DB by Protein ID:NP_032982
Current member NCBI NM_008956.4 NP_032982.2 Accepted alive Link to Nucleotide Sequence:NM_008956.4Link to Protein Sequence:NP_032982.2Re-query CCDS DB by Nucleotide ID:NM_008956Re-query CCDS DB by Protein ID:NP_032982Link to BLAST:NP_032982.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032982.2 529 P17225-2 529 100% 0 0

Chromosomal Locations for CCDS 35970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79854714 79854721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79856504 79856534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79858752 79858824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79858952 79859271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859352 79859522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859602 79859712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859781 79859955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79860824 79860969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862014 79862047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862449 79862541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862653 79862869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862978 79863055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79863145 79863277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTG
TCAGCAACGGCCCCTTCATCATGAGCAGCTCTGCCTCAGCAGCCAATGGAAACGATAGCAAGAAGTTCAA
AGGTGACAACAGGAGCGCAGGAGTCCCTTCCAGAGTCATCCATGTCAGAAAGCTGCCCAGCGATGTCACT
GAGGGCGAGGTCATCTCCCTAGGGCTGCCCTTTGGAAAGGTTACCAACCTTCTCATGCTGAAGGGGAAGA
ACCAGGCCTTCATTGAGATGAACACAGAGGAGGCTGCCAACACTATGGTTAACTACTATACATCGGTGGC
GCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAAGAGCTCAAGACCGACAGCTCG
CCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTAAACTCCGTCCAGTCTGGAAACCTGGCCTTGG
CAGCGTCCGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGGCAGAGCCCAGTGCTCAGGATCATTGT
GGAAAACCTTTTCTACCCAGTGACCCTGGACGTGCTGCACCAGATCTTCTCTAAGTTTGGCACCGTCCTG
AAGATCATCACGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCC
AGCATGCCAAGCTGTCCCTGGATGGCCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTCTC
CAAGCTCACCAGTCTCAATGTCAAGTACAACAATGATAAGAGCAGAGACTACACTCGACCTGACCTGCCC
TCTGGAGACAGCCAGCCTTCACTAGACCAGACCATGGCAGCAGCCTTTGGCCTCTCTGTCCCTAATGTCC
ATGGAGCCTTGGCCCCCCTGGCCATCCCGTCTGCTGCTGCTGCTGCTGCGGCCAGCCGCATTGCCATCCC
AGGGTTGGCAGGTGCTGGGAATTCTGTCCTTTTGGTCAGCAATCTGAACCCTGAGAGAGTCACACCCCAA
AGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAATAAGAAGGAGA
ACGCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCT
GCACGGGAAGTCAGTGCGCATTACACTGTCCAAGCATCAGAGTGTGCAGCTGCCTCGGGAGGGTCAGGAG
GACCAGGGCCTGACCAAGGACTATGGCAGCTCCCCGCTGCACCGCTTCAAGAAACCAGGCTCCAAGAACT
TCCAGAACATCTTTCCACCCTCAGCTACCCTGCACCTCTCCAACATCCCGCCCTCTGTGTCAGAGGACGA
CCTCAAGAGCCTCTTCTCCAGCAACGGTGGTGTGGTCAAAGGCTTCAAGTTCTTCCAGAAGGACCGCAAG
ATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCTGTGCAGGCGCTGATTGAACTGCACAACCATGACC
TGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAG

Translation (529 aa):
MDGIVPDIAVGTKRGSDELFSTCVSNGPFIMSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVT
EGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSS
PNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVL
KIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP
SGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ
SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQE
DQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRK
MALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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