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Report for CCDS35845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35845.1 Public Mus musculus 10 Ltv1 23 108 98 CCDS HistoryNCBI Gene:353258Re-query CCDS DB by CCDS ID:35845.1Re-query CCDS DB by GeneID:353258See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019950.5 ENSMUSP00000019950.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019950.5Link to Ensembl Protein Viewer:ENSMUSP00000019950.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019950Re-query CCDS DB by Protein ID:ENSMUSP00000019950
Original member Current member NCBI NM_181470.4 NP_852135.1 Accepted alive Link to Nucleotide Sequence:NM_181470.4Link to Protein Sequence:NP_852135.1Re-query CCDS DB by Nucleotide ID:NM_181470Re-query CCDS DB by Protein ID:NP_852135Link to BLAST:NP_852135.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852135.1 470 Q6NSQ7 470 100% 0 0

Chromosomal Locations for CCDS 35845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13178886 13178996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13179123 13179323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13179655 13179707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13179995 13180134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13180890 13181017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13182279 13182528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13182861 13182996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13185424 13185511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13190575 13190745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13192108 13192239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13193028 13193030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGCCTCACAGAAAGAAAAAGCCCTTTATAGAGAAGAAGAAAGCTGTGTCTTTTCACCTGGTCCACCGGA
GCCAGCGAGATCCTTTAGCCGCAGATGAAACTGCACCCCAGAGGGTTCTCTTGCCTACACAAAAGGTCAA
TGACGAGGAAAGACGGGCTGAGCAGAGGAAGTACGGCGTGTTCTTCGACGACGATTATGATTACTTGCAG
CACCTGAAGGAGCCCTCTGGGCCCGCAGAGCTTATCCCCAGCACCTCCTTTGCCACACCCCTCTGCGACA
AGACAGAAGACCCCTGCGTATACTCAAGCACTGGAATTAAGTTGCCTTCATCTGTGTTTGCATCCGAGTT
TGAGGAAGATGTTGGATTGTTAAACAAAGCAGCTCCAGTTTCAGGACCTCGACTGGATTTTGATCCAGAC
ATCGTTGCAGCTCTTGATGATGATTTTGACTTTGATGACCCAGAAAACCTCCTTGAAGATGACTTTATTC
TTCAGGCCAACAAGCCGACAGGAGGAGAGAGGATGGATACGGAGTCTGAGGAAGACGATGGCCATGAGTG
GGAAGACATGGACGACGAGGAAGGGAGTGATGACAGGAGCTCTGCAGGCTTTCTGTCAGATGGAGGTGAC
CTATCTGCCCCCGGCTCACCGCAGGAAGCCATGAAAAAGCACCTGTTTTGGGAAGAGGAAACCAAAAGCC
GTTTCACAGAGTACTCCATGACCTCCTCAGTCATGAGGAGAAATGAACAGCTGACTCTACACGATGAGAG
GTTTGAGAAGTTTTATGAACAGTATGATGATGTTGAAATTGGAGCTCTGGATAATGCAGAATTGGAAGGT
ACCATTCAAGTGGACAGCAATCGGCTGCAGGAGGTTTTGAATGACTACTACAAGGAGAAGGCAGAGAATT
GTGTAAAATTGAGTACTCTTGAGCCTTTTGAGGATCAAGATCTGCCAACAAATGAGCTTGATGAGTCTGA
AAAGGAAGAGACCATTACTGTAGTTCTTGAGGAAGCCAAAGAGAAGTGGGATTGTGAATCCATTTGCAGT
ACATACTCCAATTTATACAACCACCCACAGCTCATCAAATATGAACCAAAGCCCAAACAAATCCACCTGT
CGTCTAAGACCGGAATACCTCTCAATGTCTTACCTAAGAAAGGCCTCACAGCAAAGCAGGTTGAACGGAT
GCAGATGATCAATGGCAGTGACCTACCCAAAGTGTCCACCCAGCCTCGTTCCAAAGATGAGACCAAAGAG
GATAAAAGAGCCAGGAAGCAAGCCATAAAAGAGGAGCGGAAGGAACGAAGAGTTGAAAAGAAAGCTAACA
AGCTAGCATTTAAACTGGAGAAAAGAAGACAAGAAAAGGAGCTACTGAACTTGAAGAAAAACATTGAAGG
TCTAAAGCTGTAG

Translation (470 aa):
MPHRKKKPFIEKKKAVSFHLVHRSQRDPLAADETAPQRVLLPTQKVNDEERRAEQRKYGVFFDDDYDYLQ
HLKEPSGPAELIPSTSFATPLCDKTEDPCVYSSTGIKLPSSVFASEFEEDVGLLNKAAPVSGPRLDFDPD
IVAALDDDFDFDDPENLLEDDFILQANKPTGGERMDTESEEDDGHEWEDMDDEEGSDDRSSAGFLSDGGD
LSAPGSPQEAMKKHLFWEEETKSRFTEYSMTSSVMRRNEQLTLHDERFEKFYEQYDDVEIGALDNAELEG
TIQVDSNRLQEVLNDYYKEKAENCVKLSTLEPFEDQDLPTNELDESEKEETITVVLEEAKEKWDCESICS
TYSNLYNHPQLIKYEPKPKQIHLSSKTGIPLNVLPKKGLTAKQVERMQMINGSDLPKVSTQPRSKDETKE
DKRARKQAIKEERKERRVEKKANKLAFKLEKRRQEKELLNLKKNIEGLKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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