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Report for CCDS35793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35793.1 Public Mus musculus 1 Ifi203 23 108 98 CCDS HistoryNCBI Gene:15950Re-query CCDS DB by CCDS ID:35793.1Re-query CCDS DB by GeneID:15950See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081216.11 ENSMUSP00000079976.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081216.11Link to Ensembl Protein Viewer:ENSMUSP00000079976.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081216Re-query CCDS DB by Protein ID:ENSMUSP00000079976
Original member Current member EBI ENSMUST00000123708.7 ENSMUSP00000121480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123708.7Link to Ensembl Protein Viewer:ENSMUSP00000121480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123708Re-query CCDS DB by Protein ID:ENSMUSP00000121480
Original member Current member NCBI NM_001302651.1 NP_001289580.1 Accepted alive Link to Nucleotide Sequence:NM_001302651.1Link to Protein Sequence:NP_001289580.1Re-query CCDS DB by Nucleotide ID:NM_001302651Re-query CCDS DB by Protein ID:NP_001289580Link to BLAST:NP_001289580.1

Chromosomal Locations for CCDS 35793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173922536 173922604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173923949 173924137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173926806 173927222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173935010 173935177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173936518 173936639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173937742 173938006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGATGGCTGAATACAAGAATATTGTTCTTCTAAAAGGATTAGAGAACATGGAGGACTATCAGTTTAGGA
CAGTCAAGTCCTTACTAAGAAAAGAACTAAAACTTACTAAAAAAATGCAAGAAGATTATGATAGGATTCA
GCTGGCGGACTGGATTGAGGACAAGTTCCCCAAAGATGCTGGACTAGACAAACTGATAAAAGTGTGTGAG
CACATAAAAGATCTTAAAGACCTTGCTAAAAAACTTAAAACAGAGAAGGCAAAAGTTCAAAAGAAAAAGG
AAGGAAAATGCAAAACGGCTGGGAAAAAAAAAGGGCAAGATGAACTCAGTTCTTCTGAATCTCTTTTCAA
CAATAAAGAATCAAACAAGAGTGTACCGTCTTCAAAGAAAAAGAGAAAACAGATCACAAAAACTGAAGGT
GGAAAGAAAAAGAAGCTCACCCAGGAGCAGGCTCAGCTTCCAGAAACTTCAGGAACCAACATAAAAAAAG
AGGAAGATTGCCTCCAGAATCCTCATAAGTCTCCACCAACACCATCCAGCAGTTCCTCAAACAAGGCACC
AAGGAGAGGAACTGTACCAAAGGAGCCTTCTAGAGAAGAAGGTCACCATCAAGGTCCCAAACAAGTGATG
GTGTTGAAAGTAACAGAACCATTTACATATGACTTTGAAGAAACGAAAAGGATGTTTCATGCTACAGTGG
CTACTGAAACTGAGTTCTTCAGAGTGAAGGTTTTTGACACAGCTCTAATGAGCAAGTTCATCCCAGGAAA
GATCATTGCCATATCACATTATATTGGGTGCAATGGGTTTCTGGAGATATACAGAGCTTCCTGTGTGTCC
GATGTGAACATTAACCCAACAATGATTATCTCAAATACACTGAGTGAAAGTGCTATTGCAACTCCAAAAA
TTTCTTATCTTCTCTCACAAGCAAAGGGGACATTTGTAAATGGAGAATTTGTAGTATTTAAGAAAAGTGA
GAGGCATGAGTGCATTTGCTATGGAATTGGAGATGATACAGGAAAAATGGCAGTGGTGGTTTATGGACGA
CTCACCAATGTCAGGTGTGAACCAGGCAGTAAACTTAGACTTGTCTGCTTTGAATTGACTTCCACTAAAG
ATGTGTGCCTCCTGAGGTCTGTAAGGCACAGTTACATGCAGGTCATCAATGAAGGAAAGCCACTCAACCC
AGACTCAGTCAGGAGAAACTCTCTGGAACCATACTTCTGA

Translation (409 aa):
MMAEYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWIEDKFPKDAGLDKLIKVCE
HIKDLKDLAKKLKTEKAKVQKKKEGKCKTAGKKKGQDELSSSESLFNNKESNKSVPSSKKKRKQITKTEG
GKKKKLTQEQAQLPETSGTNIKKEEDCLQNPHKSPPTPSSSSSNKAPRRGTVPKEPSREEGHHQGPKQVM
VLKVTEPFTYDFEETKRMFHATVATETEFFRVKVFDTALMSKFIPGKIIAISHYIGCNGFLEIYRASCVS
DVNINPTMIISNTLSESAIATPKISYLLSQAKGTFVNGEFVVFKKSERHECICYGIGDDTGKMAVVVYGR
LTNVRCEPGSKLRLVCFELTSTKDVCLLRSVRHSYMQVINEGKPLNPDSVRRNSLEPYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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