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Report for CCDS35526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35526.1 Public Mus musculus 1 Ogfrl1 23 108 98 CCDS HistoryNCBI Gene:70155Re-query CCDS DB by CCDS ID:35526.1Re-query CCDS DB by GeneID:70155See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027343.5 ENSMUSP00000027343.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027343.5Link to Ensembl Protein Viewer:ENSMUSP00000027343.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027343Re-query CCDS DB by Protein ID:ENSMUSP00000027343
Original member Current member NCBI NM_001081079.1 NP_001074548.1 Accepted alive Link to Nucleotide Sequence:NM_001081079.1Link to Protein Sequence:NP_001074548.1Re-query CCDS DB by Nucleotide ID:NM_001081079Re-query CCDS DB by Protein ID:NP_001074548Link to BLAST:NP_001074548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074548.1 464 Q8VE52 464 100% 0 0

Chromosomal Locations for CCDS 35526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23369749 23370448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23375730 23375875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23375988 23376054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23376171 23376249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23378726 23378804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23378972 23379058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23382815 23383051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGGCAACCTGCTCGGCGGGGTCAGCTTCCGCGAGCCCACCACCGTGGAGGACTGCGACTCCACCTGGC
AGACCGATTCGGAGCCCGAGCCCGAGCAGCCGGGGCCGGCAGGCGGTGGCGAGGGCCAGCAGCACGACGA
GCCGGAGCAGCCCAAGCAACCTCCCGAGAGAGCCGGAGGGCGGCCCCGCGCCAGCCCCGTGCCCGAGGAC
CACGCCGAGGCGGCGGGCGCGGAGCAGGGCGGCGAGTCCACGGAAGGAAATGCCAAACCAAAGAGAAGCT
TCTATGCCGCGAGGGATCTGTACAAGTACCGACATCAGTACCCAAACTTCAAAGATATCCGATATCAAAA
TGACTTGAGCAACCTTCGCTTTTATAAGAACAAAATTCCATTTAAGCCGGATGGTGTTTACATTGAAGAG
GTTCTAAATAAGTGGAAAGGGGACTACGAGAAGCTGGAGCACAACCACACGTACATCCAATGGCTTTTCC
CCCTGAGAGAACAAGGCTTGAACTTTTATGCTAAAGAATTAACCACATATGAAATCGAGGAATTCAAAAA
AACAAAGGAAGCAATCAGAAGATTCCTCTTGGCTTATAAAATGATGCTAGAGTTTTTTGGAATAAAGCTG
ATTGATAAGACTGGAAATGTTGCTCGGGCCGGAAACTGGCAAGAAAGATTTCAACATCTTAATGAGTCTC
AGCACAACTATTTAAGAATTACGCGAATTCTTAAAAGCCTTGGCGAGCTTGGATACGAGAGTTTTAAATC
TCCTCTGGTAAAATTCATTCTTCACGAGGCTCTAGTGGAGAATACTATTCCCAATATTAAGCAGAGTGCT
CTGGAGTACTTTGTTTATACAATTAGAGACAGGAGAGAGAGGAGAAAGCTCCTGCGATTTGCCCAGAAAC
ATTACACACCATCAGAGAATTTCATCTGGGGGCCACCTAAGAAAGAACTGCCAGAGCGAAGCAAAGCCCA
GAAAACCCCGACTCTGCCCGCGTCGGGCTCCAATGGTCAAACTTCTACACACAAGAAATCCAAGGACTCC
AAAATTTCCCCAGGAGCTAGTCACGTAAATAGCAAATCAGTGGAAGAAAAAAAGGGGGCATCAAGAGAGC
CTGGGGAGGAGGCGGACAAGCCGAGCCCAGAGCCTGGCAGTGGAGATCCCAAGCCAAGAAACACAGAGAA
AGACAGTGCTGCTGACCAATCTGATTCTCCACCCGAGAAAACAGTTCCTGATACCGCAGGAAAAGGGGAA
TGTCCAACTTCTTCTGAAAAAGATGGAGAAGGGGAAGACCAGAGCAAAGACTCTGAAAATCCTGAAAATG
CCGGTTGTCATGCTGAGGTAGTGGCACAGCAAAATGCCACAAACCCACAAACCAGTTCTGGTTAA

Translation (464 aa):
MGNLLGGVSFREPTTVEDCDSTWQTDSEPEPEQPGPAGGGEGQQHDEPEQPKQPPERAGGRPRASPVPED
HAEAAGAEQGGESTEGNAKPKRSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEE
VLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKL
IDKTGNVARAGNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVENTIPNIKQSA
LEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPKKELPERSKAQKTPTLPASGSNGQTSTHKKSKDS
KISPGASHVNSKSVEEKKGASREPGEEADKPSPEPGSGDPKPRNTEKDSAADQSDSPPEKTVPDTAGKGE
CPTSSEKDGEGEDQSKDSENPENAGCHAEVVAQQNATNPQTSSG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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