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Report for CCDS35342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35342.1 Public Homo sapiens X HDX 24 110 108 CCDS HistoryNCBI Gene:139324Re-query CCDS DB by CCDS ID:35342.1Re-query CCDS DB by GeneID:139324See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35342.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297977.9 ENSP00000297977.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297977.9Link to Ensembl Protein Viewer:ENSP00000297977.5Re-query CCDS DB by Nucleotide ID:ENST00000297977Re-query CCDS DB by Protein ID:ENSP00000297977
Original member Current member EBI ENST00000373177.3 ENSP00000362272.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373177.3Link to Ensembl Protein Viewer:ENSP00000362272.2Re-query CCDS DB by Nucleotide ID:ENST00000373177Re-query CCDS DB by Protein ID:ENSP00000362272
Original member Current member NCBI NM_001177479.2 NP_001170950.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001177479.2Link to Protein Sequence:NP_001170950.1Re-query CCDS DB by Nucleotide ID:NM_001177479Re-query CCDS DB by Protein ID:NP_001170950Link to BLAST:NP_001170950.1
Original member Current member NCBI NM_144657.5 NP_653258.2 Accepted alive Link to Nucleotide Sequence:NM_144657.5Link to Protein Sequence:NP_653258.2Re-query CCDS DB by Nucleotide ID:NM_144657Re-query CCDS DB by Protein ID:NP_653258Link to BLAST:NP_653258.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170950.1 690 Q7Z353-1 690 100% 0 0
NP_653258.2 690 Q7Z353-1 690 100% 0 0

Chromosomal Locations for CCDS 35342.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 84321889 84322014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84326178 84326300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84333759 84333842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84336801 84336880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84344250 84344457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84361466 84361612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84440532 84440585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84468472 84469575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 84475251 84475397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGAATCTACGTTCTGTATTTACTGTAGAACAACAAAGGATTTTACAGCGTTATTATGAAAATGGAATGA
CAAATCAAAGTAAAAATTGCTTTCAGCTCATATTACAGTGTGCACAGGAGACTAAGCTGGACTTCAGTGT
AGTCAGGACGTGGGTTGGCAATAAGAGAAGAAAGATGAGTAGTAAGAACTCTGAATCTGGAACAGCAACA
ACAGGAACCTCTTTGTCAGCTCCAGACATCACAGTCAGAAATGTGGTTAATATTGCTCGACCCTCAAGCC
AGCAGTCTTCTTGGACATCTGCCAATAATGATGTCATTGTAACTGGTATATACAGTCCAGCCAGTTCATC
AAGTAGGCAAGGAACAAACAAACATACAGACACACAAATTACAGAAGCACATAAAATCCCTATTCAGAAA
ACAGCCACTAAAAATGATACTGAGTTTCAGTTACACATTCCTGTCCAAAGACAAGTAGCACACTGTAAAA
ATGCTTCCCTACTCCTAGGTGAAAAAACAATTATTTTGTCAAGACAGACAAGTGTGCTAAATGCTGGAAA
CTCAGTATTCAATCACGCAAAGAAAAACTATGGAAACTCTTCAGTACAAGCTTCTGAAATGACAGTACCT
CAAAAGCCTTCTGTGTGCCACCGACCTTGTAAAATTGAACCAGTTGGGATTCAAAGGTCATATAAGCCTG
AACACACAGGCCCAGCATTACATAACTTATGTGGGCAAAAGCCAACTATTAGAGACCCTTACTGTAGAAC
ACAAAACTTGGAAATCCGTGAAGTGTTTTCATTGGCAGTTAGCGATTACCCCCAGAGAATTCTGGGAGGA
AATGCCCCACAGAAGCCTAGCTCAGCAGAAGGAAATTGTTTGTCCATTGCAATGGAGACTGGAGATGCTG
AGGATGAATATGCCAGAGAGGAAGAGCTGGCATCGATGAGAGCACAGATACCAAGCTATTCGAGATTTTA
TGAAAGTGGCAGTTCCCTTCGAGCTGAGAACCAAAGTACAACCTTGCCCGGACCAGGAAGAAATATGCCA
AATTCACAAATGGTGAATATTAGAGATATGTCAGACAATGTACTGTATCAAAACAGAAACTACCATTTGA
CACCACGGACCTCATTACATACAGCATCTAGTACAATGTACAGTAATACCAATCCATTACGGAGTAATTT
TTCTCCTCATTTTGCATCATCAAACCAATTGAGATTATCACAAAACCAAAACAATTACCAGATTTCAGGA
AACCTTACTGTGCCTTGGATTACAGGGTGTTCTAGAAAAAGAGCACTACAGGACCGCACTCAGTTCAGTG
ACCGAGACTTAGCCACCCTTAAGAAGTATTGGGACAATGGCATGACCAGCCTGGGCTCTGTTTGTAGAGA
GAAAATTGAAGCTGTGGCAACTGAATTAAATGTTGACTGTGAAATAGTTCGGACTTGGATTGGGAATCGA
AGAAGGAAATATCGTTTAATGGGGATTGAAGTTCCACCTCCAAGAGGAGGCCCTGCTGATTTCTCTGAGC
AGCCTGAGTCTGGTTCTTTATCTGCACTCACACCAGGAGAGGAAGCTGGGCCTGAAGTAGGAGAGGATAA
TGACAGAAATGATGAAGTATCCATCTGTTTGTCTGAAGGAAGCTCTCAAGAAGAGCCCAATGAAGTTGTT
CCGAATGATGCAAGGGCTCATAAGGAAGAGGACCACCATGCAGTAACCACAGATAATGTGAAAATAGAAA
TTATTGATGATGAAGAAAGTGACATGATAAGTAATTCTGAAGTAGAACAAGTAAACTCTTTCTTGGATTA
TAAGAATGAAGAAGTCAAATTCATTGAAAATGAGCTCGAGATTCAAAAGCAAAAATACTTTAAACTTCAG
ACTTTTGTTAGAAGCTTGATATTAGCAATGAAAGCTGATGATAAGGAACAACAGCAGGCACTGCTGTCAG
ATTTACCTCCTGAATTAGAGGAAATGGATTTCAATCATGCCTCACTGGAGCCTGATGATACCTCATTCAG
TGTATCTTCTTTGTCAGAGAAAAATGTCTCAGAAAGTTTGTGA

Translation (690 aa):
MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMSSKNSESGTAT
TGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQGTNKHTDTQITEAHKIPIQK
TATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQTSVLNAGNSVFNHAKKNYGNSSVQASEMTVP
QKPSVCHRPCKIEPVGIQRSYKPEHTGPALHNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGG
NAPQKPSSAEGNCLSIAMETGDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMP
NSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG
NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNR
RRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVV
PNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENELEIQKQKYFKLQ
TFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTSFSVSSLSEKNVSESL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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