NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35147.1 Public Homo sapiens 9 PTRH1 24 110 108 CCDS HistoryNCBI Gene:138428Re-query CCDS DB by CCDS ID:35147.1Re-query CCDS DB by GeneID:138428See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35147.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419060.5 ENSP00000418661.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419060.5Link to Ensembl Protein Viewer:ENSP00000418661.1Re-query CCDS DB by Nucleotide ID:ENST00000419060Re-query CCDS DB by Protein ID:ENSP00000418661
Original member Current member EBI ENST00000543175.5 ENSP00000439469.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000543175.5Link to Ensembl Protein Viewer:ENSP00000439469.1Re-query CCDS DB by Nucleotide ID:ENST00000543175Re-query CCDS DB by Protein ID:ENSP00000439469
Original member Current member NCBI NM_001002913.3 NP_001002913.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002913.3Link to Protein Sequence:NP_001002913.1Re-query CCDS DB by Nucleotide ID:NM_001002913Re-query CCDS DB by Protein ID:NP_001002913Link to BLAST:NP_001002913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002913.1 214 Q86Y79 214 100% 0 0

Chromosomal Locations for CCDS 35147.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 127714100 127714282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127714379 127714424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127714603 127714702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127714975 127715194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127715544 127715639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGAGGCCGGGCGGCTTTTTGGGCGCCGGACAGCGGCTGAGTAGAGCCATGAGCCGATGTGTTTTGGAGC
CTCGCCCCCCGGGGAAGCGGTGGATGGTGGCTGGCCTGGGGAATCCCGGACTGCCCGGCACGCGACACAG
CGTGGGCATGGCGGTGCTGGGGCAGCTGGCGCGGCGGCTGGGTGTGGCGGAGAGTTGGACGCGCGACCGG
CACTGTGCCGCCGACCTCGCCCTGGCCCCGCTGGGGGATGCCCAACTGGTCCTGCTCCGGCCACGGCGGC
TTATGAACGCCAACGGGCGCAGCGTGGCCCGGGCTGCGGAGCTGTTTGGGCTGACTGCCGAGGAAGTCTA
CCTGGTGCATGATGAGCTGGACAAGCCCCTGGGGAGACTGGCTCTGAAGCTGGGGGGCAGTGCCAGGGGC
CACAATGGAGTCCGTTCCTGCATTAGCTGCCTCAACTCCAATGCAATGCCAAGGCTGCGGGTGGGTATCG
GGCGCCCGGCGCACCCTGAGGCGGTTCAGGCCCATGTGCTGGGCTGCTTCTCCCCTGCTGAGCAGGAGCT
GCTGCCTCTGTTGCTGGATCGAGCCACCGACCTGATCTTGGACCACATCCGTGAGCGAAGCCAGGGGCCC
TCACTGGGGCCGTGA

Translation (214 aa):
MRPGGFLGAGQRLSRAMSRCVLEPRPPGKRWMVAGLGNPGLPGTRHSVGMAVLGQLARRLGVAESWTRDR
HCAADLALAPLGDAQLVLLRPRRLMNANGRSVARAAELFGLTAEEVYLVHDELDKPLGRLALKLGGSARG
HNGVRSCISCLNSNAMPRLRVGIGRPAHPEAVQAHVLGCFSPAEQELLPLLLDRATDLILDHIRERSQGP
SLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH