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Report for CCDS34691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34691.1 Public Homo sapiens 7 PTCD1 24 110 108 CCDS HistoryNCBI Gene:26024Re-query CCDS DB by CCDS ID:34691.1Re-query CCDS DB by GeneID:26024See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34691.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292478.9 ENSP00000292478.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292478.9Link to Ensembl Protein Viewer:ENSP00000292478.5Re-query CCDS DB by Nucleotide ID:ENST00000292478Re-query CCDS DB by Protein ID:ENSP00000292478
Original member Current member NCBI NM_015545.4 NP_056360.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015545.4Link to Protein Sequence:NP_056360.2Re-query CCDS DB by Nucleotide ID:NM_015545Re-query CCDS DB by Protein ID:NP_056360Link to BLAST:NP_056360.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056360.2 700 O75127 700 100% 0 0

Chromosomal Locations for CCDS 34691.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99419967 99420149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99423775 99423957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99424795 99425616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99429103 99429204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99429588 99429806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99433278 99433418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99434790 99435242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGGACTTCGTGAGACTCGCTCGACTGTTCGCCAGGGCCCGCCCCATGGGACTGTTCATCCTGCAACACC
TGGACCCCTGTAGAGCCAGGTGGGCAGGAGGCAGGGAGGGGCTGATGCGGCCAATGTGGGCGCCCTTCAG
CAGCTCCTCCTCTCAGCTGCCCCTCGGCCAGGAGCGTCAGGAAAACACGGGCAGCCTGGGCTCTGACCCG
AGCCACTCCAACTCCACGGCCACGCAGGAAGAAGACGAGGAGGAGGAGGAGAGTTTTGGGACCCTCTCTG
ACAAATACTCCTCCCGGAGACTATTCCGCAAATCCGCAGCCCAGTTCCATAACCTGCGGTTTGGGGAACG
GAGAGATGAGCAAATGGAACCGGAGCCCAAATTATGGCGAGGCCGGAGAAACACCCCGTACTGGTACTTC
TTGCAGTGCAAACACCTGATCAAGGAAGGGAAGCTGGTTGAAGCCCTGGACCTGTTTGAGAGGCAGATGC
TGAAGGAGGAGCGATTGCAGCCCATGGAGAGCAACTACACGGTGCTGATTGGGGGCTGCGGGCGGGTTGG
CTACCTGAAGAAGGCCTTCAACCTCTACAACCAGATGAAAAAGCGGGACCTGGAGCCCTCGGACGCCACC
TACACGGCCCTGTTCAACGTCTGTGCCGAGTCCCCCTGGAAGGACTCAGCTCTACAGAGCGCCCTGAAGC
TCCGGCAGCAGCTGCAGGCCAAAAACTTCGAGCTCAACTTGAAAACATACCACGCGCTGCTGAAGATGGC
TGCCAAGTGCGCAGACCTTAGGATGTGCCTCGATGTGTTCAAGGAAATCATCCACAAAGGGCACGTGGTC
ACAGAGGAGACCTTCAGTTTCCTGCTCATGGGCTGCATCCAAGACAAGAAGACAGGCTTCCGGTACGCCC
TCCAGGTGTGGCGGCTGATGCTGAGTCTAGGGCTACAGCCGAGCCGGGACAGCTACAACCTGCTGTTGGT
GGCAGCTCGGGACTGTGGCCTAGGGGACCCCCAGGTGGCCTCAGAGCTGCTTCTGAAGCCCAGGGAGGAG
GCGACTGTGCTTCAGCCCCCAGTGAGCAGGCAGCGGCCAAGGAGGACAGCCCAGGCCAAGGCAGGCAACC
TCATGTCAGCCATGCTGCATGTGGAGGCCCTGGAGAGGCAGCTGTTTCTGGAACCTTCTCAGGCACTTGG
GCCTCCAGAGCCTCCGGAAGCCAGAGTGCCCGGCAAGGCCCAACCAGAGGTGGATACTAAGGCAGAGCCC
AGCCACACAGCAGCCCTCACCGCAGTGGCCCTGAAGCCACCTCCCGTGGAGCTGGAAGTCAACCTCCTGA
CCCCCGGGGCCGTTCCCCCTACAGTGGTCTCCTTTGGAACGGTGACCACCCCAGCTGACCGGCTGGCCTT
GATAGGGGGCCTGGAGGGCTTCCTGAGCAAGATGGCAGAGCACAGGCAGCAGCCCGACATCAGGACCCTC
ACGCTACTGGCCGAGGTGGTGGAGTCCGGGAGTCCTGCAGAGTCCTTGCTGCTGGCCCTCCTGGATGAGC
ACCAGGTAGAGGCCGACCTGACATTCTTTAACACGCTGGTGAGAAAGAAGAGCAAGCTGGGAGACCTGGA
GGGGGCCAAGGCGCTGTTGCCGGTCCTGGCAAAGAGGGGCCTCGTCCCCAACCTGCAGACATTCTGCAAC
CTGGCCATCGGGTGCCACAGGCCGAAGGACGGTCTACAGCTTCTCACAGACATGAAGAAGTCCCAGGTGA
CCCCCAACACTCACATCTACAGTGCCCTCATCAACGCGGCCATCAGGAAGCTGAACTACACCTATCTCAT
CAGCATCTTGAAGGACATGAAGCAGAACAGGGTCCCGGTGAACGAAGTGGTCATCCGCCAGCTGGAGTTT
GCAGCCCAGTACCCTCCCACCTTTGACCGGTACCAAGGGAAGAACACCTACCTGGAGAAGATTGACGGCT
TCCGAGCCTATTACAAGCAGTGGCTGACAGTGATGCCCGCAGAGGAAACCCCGCACCCCTGGCAGAAGTT
CCGGACCAAGCCCCAGGGGGACCAGGACACCGGCAAGGAGGCTGATGACGGATGTGCCCTTGGGGGCAGG
TGA

Translation (700 aa):
MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQENTGSLGSDP
SHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDEQMEPEPKLWRGRRNTPYWYF
LQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDAT
YTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVV
TEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREE
ATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP
SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTL
TLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCN
LAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQLEF
AAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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