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Report for CCDS34242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34242.1 Public Homo sapiens 5 KDM3B 24 110 108 CCDS HistoryNCBI Gene:51780Re-query CCDS DB by CCDS ID:34242.1Re-query CCDS DB by GeneID:51780See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314358.10 ENSP00000326563.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314358.10Link to Ensembl Protein Viewer:ENSP00000326563.5Re-query CCDS DB by Nucleotide ID:ENST00000314358Re-query CCDS DB by Protein ID:ENSP00000326563
Original member Current member NCBI NM_016604.4 NP_057688.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016604.4Link to Protein Sequence:NP_057688.3Re-query CCDS DB by Nucleotide ID:NM_016604Re-query CCDS DB by Protein ID:NP_057688Link to BLAST:NP_057688.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057688.3 1761 Q7LBC6-1 1761 100% 0 0

Chromosomal Locations for CCDS 34242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138352796 138352987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138372674 138372841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138375093 138375206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138377720 138377825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138379584 138379708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138381516 138381590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138386022 138386621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138391013 138392261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138393171 138393372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138398178 138398392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138399860 138400012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138415132 138415239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138417483 138417610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138418953 138419232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138420706 138420962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138424075 138424341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138425411 138425582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138426975 138427065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138427189 138427319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138427967 138428086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138429826 138429965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138430249 138430425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138431425 138431559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138435620 138435700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5286 nt):
ATGGCGGACGCGGCGGCCTCCCCGGTGGGCAAGCGGCTGCTGCTGCTGTTCGCGGACACTGCGGCCTCAG
CC
TCGGCCTCGGCTCCCGCGGCGGCAGCGGCGAGCGGAGATCCGGGGCCTGCGCTGCGCACTCGAGCCTG
G
CGGGCCGGCACGGTGCGGGCCATGAGCGGGGCGGTGCCCCAGGACCTAGCGATCTTTGTAGAATTTGAT
GGC
TGTAACTGGAAGCAACACTCCTGGGTAAAAGTTCATGCTGAGGAAGTTATCGTGCTTCTGCTGGAAG
GG
TCTCTTGTATGGGCGCCCCGTGAGGACCCAGTCCTTCTCCAGGGCATTCGAGTCTCCATTGCACAATG
G
CCAGCCCTGACTTTTACTCCCCTTGTAGATAAACTGGGTTTGGGTTCTGTGGTTCCAGTGGAATATCTT
CTG
GATCGAGAGCTTCGGTTCCTGTCAGATGCCAATGGGTTGCATCTGTTTCAGATGGGAACAGATAGCC
AA
AACCAGATTCTTTTGGAACATGCTGCACTGAGAGAAACAGTTAATGCTTTGATCAGTGACCAAAAGCT
A
CAAGAGATATTCAGCCGAGGTCCCTACAGTGTTCAAGGTCACAGGGTCAAAATATATCAGCCAGAGGGG
GAA
GAAGGGTGGCTCTATGGTGTTGTGAGCCATCAGGACTCCATCACTCGTCTTATGGAGGTGTCTGTAA
CT
GAGAGTGGTGAGATCAAGTCGGTAGATCCCAGACTAATCCATGTGATGCTGATGGATAATTCAGCGCC
T
CAAAGCGAGGGGGGTACGTTAAAAGCAGTAAAATCTTCCAAAGGAAAGAAGAAGAGAGAAAGCATAGAG
GGG
AAAGATGGCCGGAGGAGGAAAAGTGCTTCGGACTCTGGGTGTGACCCTGCATCAAAGAAATTAAAAG
GA
GACAGGGGTGAAGTAGACAGTAATGGGAGCGATGGAGGTGAGGCAAGCCGAGGGCCCTGGAAAGGAGG
G
AATGCCAGTGGAGAGCCAGGGCTGGATCAGAGAGCCAAGCAGCCACCGTCTACATTTGTCCCCCAGATA
AAC
CGCAACATTCGCTTTGCCACTTACACCAAAGAAAACGGCAGGACTCTGGTGGTGCAGGATGAGCCTG
TA
GGTGGGGACACACCTGCATCTTTCACTCCATATTCTACAGCCACAGGTCAGACACCTTTGGCCCCAGA
G
GTGGGTGGAGCCGAAAACAAAGAGGCAGGAAAAACACTGGAACAAGTTGGCCAGGGCATAGTGGCTTCC
GCA
GCTGTGGTCACTACCGCCAGCTCCACCCCAAACACAGTGAGGATCTCAGACACTGGCCTTGCAGCAG
GG
ACTGTGCCAGAAAAACAGAAAGGCAGCCGGTCGCAGGCCTCGGGAGAGAATTCAAGAAATTCTATTCT
G
GCCTCTTCTGGATTTGGAGCACCTCTCCCTAGTTCATCGCAACCTTTGACTTTTGGAAGTGGAAGGAGC
CAG
TCCAATGGTGTTCTAGCCACAGAGAACAAACCTTTGGGCTTCTCTTTTGGCTGTAGCTCTGCACAAG
AG
GCACAGAAAGACACTGATCTCTCCAAAAACTTGTTTTTTCAATGCATGTCCCAAACTTTACCTACCAG
T
AACTACTTCACTACTGTTTCAGAGAGTTTGGCTGATGATTCTTCTAGTCGGGACTCATTCAAACAAAGC
CTT
GAGAGCCTGAGCTCAGGCCTGTGTAAAGGCAGATCCGTTCTTGGAACAGACACTAAGCCAGGCTCTA
AG
GCTGGCAGCTCTGTGGACCGGAAAGTGCCTGCAGAGTCCATGCCCACCCTCACTCCAGCCTTCCCACG
G
AGCCTCCTAAATGCCCGTACCCCAGAGAATCATGAAAATCTATTTTTACAGCCCCCCAAATTGTCCCGA
GAA
GAGCCTTCTAATCCTTTCCTGGCATTTGTGGAGAAAGTTGAACACAGCCCTTTCAGTAGTTTTGCAT
CT
CAGGCATCAGGTAGCTCCTCTTCTGCTACCACTGTCACCTCCAAGGTGGCACCCAGCTGGCCCGAGTC
T
CACTCCTCTGCAGATTCGGCATCTTTAGCAAAGAAGAAACCCCTCTTCATTACAACTGACTCCTCCAAG
CTA
GTATCTGGTGTTCTGGGCTCAGCTCTTACCAGTGGGGGCCCAAGCCTCTCTGCCATGGGGAATGGCC
GC
TCCAGCTCGCCCACCAGCAGCCTCACTCAGCCCATTGAGATGCCAACTCTCTCCTCTAGCCCCACAGA
G
GAGAGGCCAACTGTGGGGCCTGGGCAGCAGGACAATCCCCTCCTCAAAACCTTTAGTAACGTCTTTGGC
AGG
CACTCAGGCGGCTTTCTGTCCTCCCCGGCAGATTTTTCACAGGAGAACAAAGCTCCTTTTGAAGCTG
TG
AAAAGGTTCTCACTGGATGAACGAAGCTTGGCTTGCAGACAAGACTCGGACTCCAGCACCAACAGTGA
C
CTGTCAGATTTGAGTGACTCTGAGGAGCAGCTGCAGGCTAAGACAGGCCTGAAGGGAATTCCAGAGCAC
CTG
ATGGGGAAGCTGGGCCCCAATGGGGAGCGCAGTGCTGAGCTGTTGCTGGGCAAAAGCAAAGGGAAGC
AG
GCCCCCAAGGGCCGGCCTCGGACTGCCCCCCTGAAAGTTGGCCAGTCAGTGCTGAAAGATGTAAGCAA
A
GTGAAGAAGCTGAAGCAATCTGGAGAGCCCTTCCTGCAGGATGGGTCATGCATCAATGTGGCACCTCAT
CTG
CACAAGTGTCGTGAATGCCGCCTGGAGCGGTACCGGAAGTTTAAGGAACAGGAGCAAGATGATTCTA
CT
GTAGCCTGCCGTTTCTTTCACTTCCGGAGGTTGATCTTCACTCGAAAAGGGGTACTCCGTGTGGAGGG
G
TTTTTAAGCCCCCAGCAAAGTGACCCTGATGCCATGAACCTGTGGATTCCCTCTTCCTCCCTAGCAGAA
GGG
ATAGATCTAGAGACCTCAAAATACATCCTGGCCAATGTTGGGGACCAGTTCTGCCAGCTCGTAATGT
CT
GAGAAGGAGGCCATGATGATGGTGGAGCCACACCAGAAAGTGGCATGGAAGCGAGCTGTGCGTGGTGT
A
CGGGAGATGTGTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTTTGTCGCAAATGTGGATTT
GGG
GTCTGCCTTGACTGTTACCGGCTCAGGAAAAGCCGGCCACGCAGTGAGACAGAAGAGATGGGTGATG
AA
GAAGTTTTCTCCTGGTTGAAGTGTGCAAAGGGACAGTCCCACGAACCAGAGAATCTCATGCCCACACA
A
ATTATTCCTGGCACAGCTCTTTACAATATTGGAGACATGGTACATGCTGCCCGGGGCAAGTGGGGAATT
AAA
GCAAACTGCCCTTGTATCAGTCGACAGAACAAATCTGTATTGAGACCTGCCGTCACCAATGGGATGT
CA
CAGCTTCCTAGCATAAACCCTAGTGCCTCTTCTGGAAACGAAACTACCTTCTCTGGTGGAGGAGGACC
G
GCACCAGTAACAACTCCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGACATCAGATCTGAAGAG
CCT
CTGAAAACAGACAGTTCGGCATCAAATAGCAATAGTGAACTGAAAGCCATCAGGCCTCCTTGCCCTG
AC
ACGGCCCCACCCTCCTCCGCCCTGCACTGGTTGGCAGATTTAGCAACTCAGAAGGCTAAAGAAGAAAC
A
AAAGAAGCAGGGTCCCTGAGGTCGGTGCTCAATAAAGAGTCTCATTCACCCTTTGGGCTGGACTCGTTC
AAC
TCCACTGCAAAGGTCTCTCCGCTGACTCCAAAGCTTTTTAACAGTCTGTTGCTGGGTCCCACTGCCT
CC
AACAACAAAACCGAAGGGTCTAGCCTTCGAGACCTCCTTCACTCCGGGCCGGGAAAACTTCCTCAAAC
C
CCCTTGGACACAGGCATACCCTTTCCCCCGGTCTTCTCTACATCCTCAGCAGGAGTGAAGAGCAAGGCC
AGC
CTACCCAACTTTCTTGACCACATCATTGCCTCAGTGGTAGAAAATAAGAAAACCTCAGATGCTTCAA
AG
CGGGCCTGCAACTTGACTGATACCCAGAAGGAAGTGAAGGAGATGGTGATGGGGTTAAATGTGCTAGA
T
CCCCATACTTCTCACTCCTGGCTTTGTGATGGGAGGCTTCTGTGTCTCCATGACCCCAGCAACAAAAAC
AAT
TGGAAGATCTTCCGGGAGTGTTGGAAGCAAGGTCAGCCAGTGCTGGTTTCGGGGGTACATAAAAAGC
TC
AAGTCTGAGCTCTGGAAGCCAGAAGCCTTTAGCCAGGAATTTGGAGACCAGGATGTAGACTTGGTGAA
C
TGCAGGAACTGTGCTATAATTTCCGATGTGAAAGTTCGGGATTTCTGGGATGGTTTCGAGATCATATGC
A
AA
CGACTACGGTCAGAAGATGGGCAGCCAATGGTGCTCAAACTCAAGGACTGGCCTCCTGGGGAAGATT
TT
CGAGACATGATGCCAACCAGGTTTGAAGATCTGATGGAGAACCTTCCTCTGCCAGAATATACCAAACG
A
GATGGCAGGCTCAATCTGGCCTCTAGGCTACCTAGCTACTTTGTAAGGCCTGATCTGGGCCCCAAGATG
TAC
AACGCCTATGGGTTGATAACAGCAGAAGATAGAAGAGTTGGTACAACAAATCTTCACTTAGATGTGT
CT
GATGCTGTTAATGTGATGGTGTATGTTGGGATTCCCATCGGGGAGGGTGCTCATGATGAAGAGGTACT
C
AAGACAATTGACGAGGGAGATGCCGATGAGGTGACGAAGCAGAGGATTCATGATGGAAAAGAGAAGCCA
GGT
GCTTTATGGCACATCTATGCAGCCAAGGATGCAGAGAAGATCCGGGAGCTGCTCCGAAAGGTTGGAG
AA
GAACAAGGCCAAGAGAACCCCCCTGATCATGACCCAATTCATGACCAAAGTTGGTACCTGGACCAGAC
C
CTCCGTAAGCGACTCTATGAGGAGTATGGCGTGCAAGGCTGGGCTATTGTGCAGTTCCTAGGTGATGCT
GTT
TTCATACCTGCTGGAGCCCCACACCAGGTTCACAATCTATACAGTTGCATAAAAGTAGCAGAAGACT
TT
GTATCTCCAGAACATGTAAAGCACTGTTTCCGCCTGACTCAGGAATTCAGGCATCTCTCTAACACTCA
T
ACAAATCATGAGGATAAACTGCAGGTGAAGAACATCATTTACCATGCAGTGAAAGATGCGGTTGGCACC
CTC
AAGGCTCATGAATCCAAACTGGCAAGGTCCTAG


Translation (1761 aa):
MADAAASPVGKRLLLLFADTAASASASAPAAAAASGDPGPALRTRAWRAGTVRAMSGAVPQDLAIFVEFD
G
CNWKQHSWVKVHAEEVIVLLLEGSLVWAPREDPVLLQGIRVSIAQWPAL
TFTPLVDKLGLGSVVPVEYL
L
DRELRFLSDANGLHLFQ
MGTDSQNQILLEHAALRETVNALISDQKLQEIFSRGPYSVQGHRVKIYQPEG
E
EGWLYGVVSHQDSITRLMEVSVTE
SGEIKSVDPRLIHVMLMDNSAPQSEGGTLKAVKSSKGKKKRESIE
G
KDGRRRKSASDSGCDPASKKLKGDRGEVDSNGSDGGEASRGPWKGGNASGEPGLDQRAKQPPSTFVPQI
N
RNIRFATYTKENGRTLVVQDEPVGGDTPASFTPYSTATGQTPLAPEVGGAENKEAGKTLEQVGQGIVAS
A
AVVTTASSTPNTVRISDTGLAAGTVPEKQKGSRSQASGE
NSRNSILASSGFGAPLPSSSQPLTFGSGRS
Q
SNGVLATENKPLGFSFGCSSAQEAQKDTDLSKNLFFQCMSQTLPTSNYFTTVSESLADDSSSRDSFKQS
L
ESLSSGLCKGRSVLGTDTKPGSKAGSSVDRKVPAESMPTLTPAFPRSLLNARTPENHENLFLQPPKLSR
E
EPSNPFLAFVEKVEHSPFSSFASQASGSSSSATTVTSKVAPSWPESHSSADSASLAKKKPLFITTDSSK
L
VSGVLGSALTSGGPSLSAMGNGRSSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLKTFSNVFG
R
HSGGFLSSPADFSQENKAPFEAVKRFSLDERSLACRQDSDSSTNSDLSDLSDSEEQLQAKTGLKGIPEH
L
MGKLGPNGERSAELLLGKSKGKQAPKGRPRTAPLK
VGQSVLKDVSKVKKLKQSGEPFLQDGSCINVAPH
L
HKCRECRLERYRKFKEQEQDDSTVACRFFHFR
RLIFTRKGVLRVEGFLSPQQSDPDAMNLWIPSSSLAE
G
IDLETSKYILANVGDQFCQLVMSEKEAMMMVEPH
QKVAWKRAVRGVREMCDVCETTLFNIHWVCRKCGF
G
VCLDCYRLRKSRPRS
ETEEMGDEEVFSWLKCAKGQSHEPENLMPTQIIPGTALYNIGDMVHAARGKWGI
K
ANCPCISRQNKSVLRPAVTNGMSQ
LPSINPSASSGNETTFSGGGGPAPVTTPEPDHVPKADSTDIRSEE
P
LKTDSSASNSNSELKAIRPPCPDTAPPSSALHWLADLATQKAKEETK
EAGSLRSVLNKESHSPFGLDSF
N
STAKVSPLTPKLFNSLLLGPTASNNKTEGSSLRDLLHSGPGKLPQTPLDTGIPFPPVFSTSSA
GVKSKA
S
LPNFLDHIIASVVENKKTSDASKRACNLTDTQKEVKEMVMGLNVLDPHTSHSWLCDGRLLCLHDPSNKN
N
WKIFRECWKQGQ
PVLVSGVHKKLKSELWKPEAFSQEFGDQDVDLVNCRNCAIISDVKVRDFWDGFEIIC
K
RLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTKRDGRLNLASRLPSYFVRPDLGPKM
Y
NAY
GLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPIGEGAHDEEVLKTIDEGDADEVTKQRIHDGKEKP
G
ALWHIYAAKDAEKIRELLRK
VGEEQGQENPPDHDPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDA
V
FIPAGAPHQ
VHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAVGT
L
KAHESKLARS




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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