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Report for CCDS34205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34205.1 Public Homo sapiens 5 SLCO4C1 24 110 108 CCDS HistoryNCBI Gene:353189Re-query CCDS DB by CCDS ID:34205.1Re-query CCDS DB by GeneID:353189See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34205.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310954.7 ENSP00000309741.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310954.7Link to Ensembl Protein Viewer:ENSP00000309741.6Re-query CCDS DB by Nucleotide ID:ENST00000310954Re-query CCDS DB by Protein ID:ENSP00000309741
Original member Current member NCBI NM_180991.5 NP_851322.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_180991.5Link to Protein Sequence:NP_851322.3Re-query CCDS DB by Nucleotide ID:NM_180991Re-query CCDS DB by Protein ID:NP_851322Link to BLAST:NP_851322.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851322.3 724 Q6ZQN7 724 100% 0 0

Chromosomal Locations for CCDS 34205.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 102236858 102237018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102239251 102239388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102240718 102240782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102247252 102247442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102249638 102249788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102257115 102257310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102257943 102258087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102260213 102260319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102261912 102262033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102263684 102263780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102270624 102270806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102291343 102291606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102295908 102296262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGAAGAGCGCCAAAGGTATTGAGAACTTGGCTTTTGTCCCCTCCAGCCCAGACATCCTGCGCCGCTTGT
CTGCGTCGCCCTCCCAAATCGAAGTCTCTGCCTTGTCCTCTGACCCCCAAAGAGAGAATTCTCAGCCACA
GGAGCTTCAGAAGCCCCAGGAGCCCCAGAAGTCACCAGAGCCATCTCTGCCTTCAGCCCCTCCCAATGTC
TCCGAAGAGAAGCTCCGGTCACTGTCGCTGTCCGAGTTTGAGGAGGGGTCTTACGGCTGGAGGAACTTCC
ATCCTCAATGTCTCCAGCGCTGCAACACACCTGGAGGCTTTCTGCTTCACTACTGCCTCTTGGCCGTCAC
GCAAGGTATTGTAGTTAATGGCCTAGTAAATATTAGCATTTCCACTGTTGAGAAGCGTTATGAAATGAAG
AGTTCCCTGACTGGCCTGATTTCATCAAGCTACGATATTTCATTCTGTTTGTTGTCTTTATTTGTATCAT
TCTTTGGTGAAAGAGGACATAAGCCGAGATGGCTTGCATTTGCAGCCTTTATGATTGGACTGGGAGCACT
TGTATTCTCATTGCCACAATTTTTCAGTGGAGAATATAAATTGGGGTCTCTTTTTGAAGACACTTGTGTA
ACAACAAGGAATAGCACCAGTTGTACATCTTCAACTTCTTCACTTTCTAACTACTTGTATGTCTTCATCT
TGGGACAACTATTGCTGGGGGCAGGAGGAACTCCTCTTTATACTCTGGGAACAGCCTTTCTTGATGATTC
TGTGCCCACACACAAGTCTTCTCTCTATATAGGAACCGGTTATGCTATGTCAATCTTAGGCCCTGCTATT
GGCTATGTATTGGGAGGACAACTGCTAACCATATACATTGATGTTGCTATGGGAGAAAGCACTGATGTCA
CTGAGGATGATCCGCGATGGTTGGGAGCTTGGTGGATTGGGTTTCTTCTATCATGGATCTTTGCTTGGTC
TTTAATAATACCTTTTTCTTGCTTTCCAAAACATTTACCAGGTACAGCAGAAATTCAAGCTGGAAAAACT
TCCCAGGCTCATCAGAGTAATAGTAATGCAGATGTGAAATTTGGAAAAAGTATTAAAGATTTTCCAGCTG
CTCTAAAGAATTTGATGAAGAATGCTGTCTTTATGTGTTTAGTTCTATCAACTTCTTCAGAAGCCTTAAT
TACTACTGGATTTGCTACATTTTTACCTAAATTTATAGAAAATCAATTCGGATTGACATCCAGCTTCGCA
GCTACTCTTGGAGGGGCTGTTTTAATTCCTGGAGCTGCTCTCGGTCAAATTTTAGGTGGCTTCCTTGTTT
CAAAATTCAGAATGACATGTAAAAACACAATGAAGTTTGCACTGTTCACATCTGGAGTTGCACTTACGCT
GAGTTTTGTATTTATGTATGCCAAATGTGAAAATGAGCCATTTGCTGGTGTATCTGAATCATATAATGGG
ACTGGAGAATTGGGAAACTTGATAGCCCCTTGTAATGCCAATTGTAACTGTTCGCGATCATATTATTATC
CTGTCTGTGGAGATGGAGTCCAATATTTTTCTCCCTGCTTTGCAGGCTGTTCAAACCCAGTTGCACACAG
GAAGCCAAAGGTATATTACAACTGTTCCTGTATTGAAAGGAAAACAGAAATAACATCCACTGCAGAAACT
TTTGGTTTTGAAGCTAAAGCTGGAAAATGTGAAACTCATTGTGCGAAACTGCCCATATTCCTTTGCATTT
TCTTTATTGTAATTATTTTTACCTTTATGGCCGGTACTCCTATAACTGTGTCTATCCTAAGGTGTGTTAA
TCACAGACAACGGTCCCTAGCCTTGGGAATACAATTTATGGTCCTTCGATTATTAGGGACAATTCCTGGA
CCAATTATATTTGGTTTCACAATAGACAGCACATGTATTCTTTGGGATATAAATGATTGTGGAATTAAAG
GAGCTTGCTGGATTTATGATAACATCAAGATGGCCCATATGCTAGTAGCCATAAGTGTTACTTGTAAAGT
TATCACCATGTTCTTCAATGGATTTGCAATCTTTTTGTATAAACCACCTCCATCAGCCACAGATGTGTCA
TTTCATAAAGAGAATGCAGTTGTGACTAATGTTTTAGCAGAACAGGATCTCAACAAAATAGTAAAAGAAG
GGTGA

Translation (724 aa):
MKSAKGIENLAFVPSSPDILRRLSASPSQIEVSALSSDPQRENSQPQELQKPQEPQKSPEPSLPSAPPNV
SEEKLRSLSLSEFEEGSYGWRNFHPQCLQRCNTPGGFLLHYCLLAVTQGIVVNGLVNISISTVEKRYEMK
SSLTGLISSSYDISFCLLSLFVSFFGERGHKPRWLAFAAFMIGLGALVFSLPQFFSGEYKLGSLFEDTCV
TTRNSTSCTSSTSSLSNYLYVFILGQLLLGAGGTPLYTLGTAFLDDSVPTHKSSLYIGTGYAMSILGPAI
GYVLGGQLLTIYIDVAMGESTDVTEDDPRWLGAWWIGFLLSWIFAWSLIIPFSCFPKHLPGTAEIQAGKT
SQAHQSNSNADVKFGKSIKDFPAALKNLMKNAVFMCLVLSTSSEALITTGFATFLPKFIENQFGLTSSFA
ATLGGAVLIPGAALGQILGGFLVSKFRMTCKNTMKFALFTSGVALTLSFVFMYAKCENEPFAGVSESYNG
TGELGNLIAPCNANCNCSRSYYYPVCGDGVQYFSPCFAGCSNPVAHRKPKVYYNCSCIERKTEITSTAET
FGFEAKAGKCETHCAKLPIFLCIFFIVIIFTFMAGTPITVSILRCVNHRQRSLALGIQFMVLRLLGTIPG
PIIFGFTIDSTCILWDINDCGIKGACWIYDNIKMAHMLVAISVTCKVITMFFNGFAIFLYKPPPSATDVS
FHKENAVVTNVLAEQDLNKIVKEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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