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Report for CCDS33527.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33527.3 Public Homo sapiens 21 LTN1 24 110 108 CCDS HistoryNCBI Gene:26046Re-query CCDS DB by CCDS ID:33527.3Re-query CCDS DB by GeneID:26046See the combined annotation on chromosome 21 in Sequence Viewer

Public Note for CCDS 33527.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33527.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361371.10 ENSP00000354977.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361371.10Link to Ensembl Protein Viewer:ENSP00000354977.4Re-query CCDS DB by Nucleotide ID:ENST00000361371Re-query CCDS DB by Protein ID:ENSP00000354977
Original member Current member EBI ENST00000389194.7 ENSP00000373846.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389194.7Link to Ensembl Protein Viewer:ENSP00000373846.3Re-query CCDS DB by Nucleotide ID:ENST00000389194Re-query CCDS DB by Protein ID:ENSP00000373846
Original member Current member NCBI NM_015565.3 NP_056380.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015565.3Link to Protein Sequence:NP_056380.3Re-query CCDS DB by Nucleotide ID:NM_015565Re-query CCDS DB by Protein ID:NP_056380Link to BLAST:NP_056380.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056380.3 1766 O94822-1 1766 100% 0 0

Chromosomal Locations for CCDS 33527.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 28930448 28930510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28931155 28931322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28932470 28932664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28935109 28935329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28936526 28936697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28941220 28941406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28943262 28943336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28943667 28943904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28944383 28944596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28945807 28945951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28946152 28946287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28947464 28947606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28952160 28952264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28953217 28953376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28956762 28956948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28957332 28957476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28958386 28958539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28959458 28959697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28960517 28960706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28965865 28965906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28966370 28967179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28969466 28969601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28970552 28970742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28971271 28971444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28981119 28981299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28982316 28982368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28984692 28984922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28986139 28986237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28986731 28986934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28992764 28992805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5301 nt):
ATGGGCGGGAAGAACAAGCAGCGAACTAAAGGGAACCTGAGGCCTTCAAACAGTGGCCGAGCTGCAGAAC
TCCTTGCCAAAGAACAGGGAACAGTGCCTGGATTTATTGGTTTTGGAACATCTCAGAGTGACCTAGGCTA
TGTTCCTGCTATTCAAGGAGCTGAAGAAATTGACAGTCTTGTAGATTCTGATTTCCGAATGGTGCTGCGG
AAACTTTCAAAGAAAGATGTCACCACAAAATTAAAAGCTATGCAGGAATTTGGAACCATGTGTACAGAGA
GAGACACAGAAACTGTGAAAGGAGTTCTTCCATATTGGCCAAGAATTTTTTGCAAAATTTCACTTGATCA
TGACCGTCGCGTCCGAGAAGCCACACAACAAGCTTTTGAAAAACTTATCCTTAAAGTAAAGAAACAGTTG
GCTCCCTACTTAAAAAGTTTAATGGGATATTGGCTAATGGCTCAGTGTGATACTTACACACCAGCTGCGT
TTGCAGCAAAAGATGCATTTGAAGCGGCTTTTCCTCCAAGCAAGCAACCTGAAGCCATAGCATTTTGTAA
GGATGAAATTACAAGTGTGCTGCAGGATCATCTTATAAAAGAAACACCTGATACACTCAGTGACCCGCAA
ACTGTTCCAGAGGAAGAAAGAGAAGCTAAATTCTACCGGGTTGTAACTTGTTCCTTATTGGCATTAAAGA
GATTACTTTGCCTTTTACCTGATAATGAGCTTGATTCTCTGGAGGAGAAATTTAAGTCTCTTTTATCACA
GAATAAGTTTTGGAAGTATGGAAAACACAGTGTACCTCAGATTCGCTCAGCTTATTTTGAGTTAGTCTCT
GCATTGTGCCAGCGCATTCCACAGTTGATGAAAGAGGAAGCATCCAAAGTGAGCCCATCAGTTCTACTTA
GCATTGATGACAGTGACCCAATTGTCTGCCCAGCTCTCTGGGAAGCTGTACTCTATACACTTACAACTAT
TGAGGACTGTTGGCTTCATGTAAATGCAAAAAAGAGTGTGTTTCCCAAGCTATCAACTGTGATTCGTGAA
GGTGGTCGGGGTCTAGCTACTGTCATATATCCTTACCTTCTGCCATTCATCAGCAAGCTCCCTCAGTCCA
TCACAAATCCAAAGTTGGATTTCTTCAAAAATTTCCTCACGTCTCTAGTTGCTGGGCTGTCAACAGAGAG
AACTAAAACCAGCTCTTTAGAGTCCTCGGCAGTAATATCTGCTTTTTTTGAATGCTTACGTTTTATAATG
CAGCAAAACTTAGGTGAGGAAGAGATTGAACAGATGCTCGTCAATGATCAGTTGATCCCTTTTATTGATG
CAGTTCTCAAAGACCCAGGATTGCAACATGGGCAGCTATTTAACCATTTAGCAGAAACTCTAAGTTCCTG
GGAAGCCAAAGCAGACACGGAAAAAGATGAAAAAACAGCTCACAACTTGGAGAACGTACTGATACATTTC
TGGGAAAGACTGTCAGAGATCTGTGTTGCGAAAATCAGTGAGCCAGAAGCTGATGTTGAGTCCGTTTTGG
GTGTATCTAACCTATTACAGGTGCTTCAGAAGCCGAAGAGCTCATTGAAGTCAAGTAAAAAAAAAAATGG
TAAGGTTAGATTTGCTGATGAGATACTTGAAAGCAATAAAGAGAATGAAAAATGTGTATCTTCAGAAGGA
GAGAAGATTGAAGGCTGGGAATTAACAACTGAACCTTCTCTCACTCATAATTCTTCAGGCCTTTTGTCTC
CTCTAAGGAAAAAACCTTTGGAAGACTTAGTCTGTAAACTCGCAGATATAAGTATTAATTATGTCAATGA
ACGAAAGTCAGAGCAACATCTAAGGTTTCTTTCTACTCTGCTTGACTCCTTTTCTTCAAGCCGAGTATTT
AAAATGCTACTTGGTGATGAAAAACAGAGTATTGTCCAAGCCAAACCTCTTGAAATAGCCAAGCTTGTAC
AAAAAAATCCTGCGGTGCAGTTTTTATACCAGAAACTGATAGGTTGGCTAAATGAAGATCAAAGGAAGGA
TTTTGGTTTCCTGGTGGACATTTTGTACAGTGCTCTCCGGTGCTGTGACAATGATATGGAAAGAAAAAAA
GTCTTGGATGATCTAACCAAGGTGGACTTGAAATGGAATTCTCTTCTTAAGATTATTGAAAAGGCATGTC
CTAGTTCAGATAAACATGCTTTAGTAACTCCTTGGCTCAAAGGCGATATCCTTGGTGAGAAATTGGTCAA
CTTGGCAGATTGTCTTTGTAATGAGGACTTGGAATCCAGGGTATCTTCAGAATCTCACTTCTCAGAAAGA
TGGACTCTTCTAAGCTTGGTATTATCCCAACATGTTAAAAATGATTACTTGATTGGAGACGTATATGTTG
AAAGAATCATTGTTAGACTTCATGAAACTTTATTCAAAACAAAGAAATTATCAGAAGCTGAAAGCAGTGA
CTCATCAGTGTCTTTTATCTGTGATGTGGCCTATAACTATTTCAGCTCAGCGAAAGGATGCTTGCTAATG
CCATCATCTGAAGATTTATTATTAACTCTCTTTCAGTTATGTGCTCAGAGCAAAGAAAAAACACATTTGC
CAGATTTTCTTATCTGTAAACTGAAAAATACTTGGCTCTCTGGTGTAAATTTATTGGTTCATCAAACTGA
CAGTTCATATAAAGAGAGTACCTTCCTACATTTGTCTGCTCTGTGGCTGAAGAACCAAGTTCAGGCTTCA
TCTTTGGATATCAACAGTCTCCAAGTCCTCTTGTCTGCTGTTGATGATTTGCTAAATACACTTCTAGAGA
GTGAAGATTCTTATCTTATGGGAGTTTATATTGGAAGTGTAATGCCGAACGACAGTGAATGGGAAAAGAT
GAGGCAGTCTCTTCCTATGCAGTGGTTACATAGACCTCTTTTAGAGGGAAGATTGAGTTTGAATTATGAA
TGTTTCAAAACAGATTTTAAGGAACAGGACATAAAGACACTTCCCAGCCATTTGTGTACTTCAGCATTAT
TGAGCAAAATGGTCTTAATTGCACTGAGAAAGGAAACAGTCTTAGAAAATAATGAGCTTGAGAAAATAAT
TGCAGAACTGCTTTATTCACTGCAGTGGTGTGAAGAATTAGATAACCCACCTATTTTTCTAATTGGATTT
TGTGAAATACTTCAAAAAATGAATATTACGTATGATAACTTACGTGTACTTGGTAATACGTCGGGCCTTT
TGCAGCTGTTATTTAACAGGTCCAGAGAACATGGCACACTGTGGTCTCTTATTATTGCTAAGTTGATCCT
TTCCCGAAGCATTTCATCTGATGAAGTAAAACCACATTATAAGAGAAAAGAAAGTTTTTTTCCACTAACT
GAAGGCAATTTGCATACCATTCAAAGTCTATGTCCATTTTTGTCAAAAGAAGAAAAGAAAGAATTTAGTG
CTCAATGTATACCTGCTCTTTTGGGCTGGACTAAGAAAGATCTTTGCAGCACTAATGGAGGTTTTGGACA
TCTTGCCATTTTCAATTCTTGTCTGCAAACCAAAAGTATAGATGATGGAGAGCTATTACATGGAATATTA
AAAATCATAATATCCTGGAAGAAAGAGCATGAAGATATTTTTCTTTTCAGTTGTAATCTATCAGAAGCAA
GTCCAGAGGTACTGGGTGTAAATATAGAAATAATCCGGTTTCTTTCCCTATTTCTGAAATACTGCTCATC
CCCTTTGGCAGAGAGTGAGTGGGACTTCATCATGTGCTCCATGTTGGCTTGGTTGGAGACAACAAGTGAG
AATCAGGCATTGTATTCTATTCCACTTGTGCAACTGTTTGCCTGTGTCAGCTGTGATTTGGCCTGTGACC
TCAGTGCTTTCTTTGATTCCACAACTCTGGATACCATTGGCAATCTTCCTGTAAATCTAATCAGTGAATG
GAAAGAATTTTTTTCCCAAGGCATCCACAGTTTGCTTTTACCTATTTTGGTGACTGTTACAGGAGAAAAC
AAAGATGTGTCTGAAACATCCTTTCAGAATGCAATGCTGAAACCCATGTGTGAAACATTAACGTATATCT
CAAAGGAACAGCTATTGAGTCACAAACTTCCTGCAAGATTAGTTGCTGACCAAAAAACAAACTTACCAGA
ATATCTCCAGACTTTGTTAAATACATTGGCCCCATTACTCCTCTTCAGAGCTAGGCCTGTGCAAATTGCT
GTTTATCATATGCTATACAAATTGATGCCTGAATTACCACAGTATGATCAGGATAATCTAAAGTCATACG
GAGATGAAGAAGAAGAGCCAGCCTTGTCACCACCAGCAGCACTGATGTCTCTTCTTAGCATTCAAGAGGA
CTTACTAGAAAATGTTTTGGGGTGTATTCCTGTTGGACAGATAGTTACTATTAAACCACTGAGTGAAGAC
TTCTGTTATGTTCTGGGATACCTTCTCACTTGGAAATTAATACTAACTTTCTTCAAAGCTGCATCATCAC
AGCTTCGGGCTTTGTATTCCATGTATCTTCGGAAAACAAAGAGTTTGAATAAATTGCTCTATCACCTGTT
CAGGCTTATGCCAGAAAATCCAACCTATGCAGAGACAGCAGTTGAGGTCCCAAATAAGGACCCTAAAACA
TTCTTTACTGAGGAGCTCCAGCTGAGTATTAGAGAAACAACAATGCTTCCATACCACATTCCACACTTGG
CTTGTTCAGTCTATCATATGACATTAAAAGACTTGCCTGCCATGGTTAGGTTGTGGTGGAATAGCAGTGA
GAAGCGTGTTTTCAATATTGTGGATAGATTTACAAGCAAGTATGTCAGCAGTGTTCTTTCTTTTCAAGAA
ATATCTTCTGTACAAACAAGTACACAACTATTTAATGGCATGACGGTTAAAGCTCGAGCTACTACTCGAG
AGGTAATGGCTACTTATACTATTGAGGACATAGTTATTGAACTTATAATACAACTGCCTTCAAATTATCC
ACTGGGTTCAATAATAGTAGAAAGTGGGAAAAGAGTAGGAGTAGCTGTTCAGCAGTGGCGGAACTGGATG
CTGCAGTTAAGCACTTACCTCACCCATCAGAATGGAAGTATTATGGAAGGCTTAGCTTTATGGAAAAATA
ACGTAGACAAACGTTTTGAGGGTGTTGAAGATTGCATGATCTGTTTCTCAGTCATTCACGGTTTCAACTA
TTCCCTTCCCAAAAAAGCCTGTAGAACATGCAAGAAAAAATTCCATTCAGCCTGCTTGTACAAATGGTTT
ACATCTAGCAACAAATCCACTTGTCCACTGTGTCGTGAGACGTTTTTCTGA

Translation (1766 aa):
MGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLR
KLSKKDVTTKLKAMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQL
APYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQ
TVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQIRSAYFELVS
ALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSTVIRE
GGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLVAGLSTERTKTSSLESSAVISAFFECLRFIM
QQNLGEEEIEQMLVNDQLIPFIDAVLKDPGLQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHF
WERLSEICVAKISEPEADVESVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEG
EKIEGWELTTEPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSRVF
KMLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSALRCCDNDMERKK
VLDDLTKVDLKWNSLLKIIEKACPSSDKHALVTPWLKGDILGEKLVNLADCLCNEDLESRVSSESHFSER
WTLLSLVLSQHVKNDYLIGDVYVERIIVRLHETLFKTKKLSEAESSDSSVSFICDVAYNYFSSAKGCLLM
PSSEDLLLTLFQLCAQSKEKTHLPDFLICKLKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQAS
SLDINSLQVLLSAVDDLLNTLLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYE
CFKTDFKEQDIKTLPSHLCTSALLSKMVLIALRKETVLENNELEKIIAELLYSLQWCEELDNPPIFLIGF
CEILQKMNITYDNLRVLGNTSGLLQLLFNRSREHGTLWSLIIAKLILSRSISSDEVKPHYKRKESFFPLT
EGNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTNGGFGHLAIFNSCLQTKSIDDGELLHGIL
KIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTSE
NQALYSIPLVQLFACVSCDLACDLSAFFDSTTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGEN
KDVSETSFQNAMLKPMCETLTYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIA
VYHMLYKLMPELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSED
FCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETAVEVPNKDPKT
FFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSSVLSFQE
ISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQWRNWM
LQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWF
TSSNKSTCPLCRETFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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