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Report for CCDS32945.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32945.2 Public Homo sapiens 19 NWD1 24 110 108 CCDS HistoryNCBI Gene:284434Re-query CCDS DB by CCDS ID:32945.2Re-query CCDS DB by GeneID:284434See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 32945.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32945.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379808.7 ENSP00000369136.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379808.7Link to Ensembl Protein Viewer:ENSP00000369136.3Re-query CCDS DB by Nucleotide ID:ENST00000379808Re-query CCDS DB by Protein ID:ENSP00000369136
Original member Current member EBI ENST00000524140.7 ENSP00000428579.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000524140.7Link to Ensembl Protein Viewer:ENSP00000428579.2Re-query CCDS DB by Nucleotide ID:ENST00000524140Re-query CCDS DB by Protein ID:ENSP00000428579
Original member Current member EBI ENST00000673803.1 ENSP00000501265.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673803.1Link to Ensembl Protein Viewer:ENSP00000501265.1Re-query CCDS DB by Nucleotide ID:ENST00000673803Re-query CCDS DB by Protein ID:ENSP00000501265
Original member Current member NCBI NM_001007525.5 NP_001007526.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007525.5Link to Protein Sequence:NP_001007526.3Re-query CCDS DB by Nucleotide ID:NM_001007525Re-query CCDS DB by Protein ID:NP_001007526Link to BLAST:NP_001007526.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007526.3 1432 Q149M9-3 1432 100% 0 0

Chromosomal Locations for CCDS 32945.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16731198 16731278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16736634 16736750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16744421 16744718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16749139 16750411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16759225 16759428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16761979 16762138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16763828 16763945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16765034 16765192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16773126 16773323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16779343 16779465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16788982 16789190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16791350 16791622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16794463 16794553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16797732 16797886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16799886 16800162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16807586 16808136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16815028 16815039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4299 nt):
ATGCAGAGAGGGAAGCCCTGCAGAGCACTGCCTACCCTGAAGTGCCAGACCTTCTGCCAGAGGCACGGCT
TGATGTTTGAGGTCGTTGATCTGAGGTGGGGTATTCGGAACATTGAAGCCACTGACCACTTGACCACAGA
ACTCTGCTTGGAGGAGGTTGACCGGTGTTGGAAAACATCCATAGGGCCAGCTTTTGTTGCCCTCATCGGT
GATCAGTACGGCCCCTGTCTGATTCCCTCGCGGATCGATGAGAAGGAGTGGGAGGTATTGAGGGACCATC
TGACTGCCAGGCCAAGTGACCTGGAGCTGGTGGCACGATACTTCCAGAGGGACGAGAATGCGTTTCCTCC
CACCTACGTCCTGCAGGCACCAGGTACTGGGGAGGCCTGTGAACCAGAGGAGGCCACCTTAACTTCTGTC
CTACGCTCTGGAGCCCAGGAGGCCCGGAGGCTGGGGCTCATCACCCAGGAGCAGTGGCAGCACTACCACC
GGTCAGTCATTGAGTGGGAGATAGAGCGGAGCCTGCTGAGCTCAGAGGACCGGGAACAGGGAGCCACCGT
CTTCCTTAGAGAGATCCAAGACCTCCACAAACACATCCTTGAAGACTGCGCCCTTAGGATGGTGGACCGG
CTCGCGGATGGCTGCCTGGACGCTGATGCCCAGAACCTTCTCAGCAGCCTCAAAAGTCACATCACTGACA
TGCACCCAGGGGTCCTCAAGACCCACCGCCTGCCGTGGAGCCGCGACTTGGTGAACCCCAAGAACAAGAC
TCACGCCTGCTACCTGAAGGAGCTGGGTGAGCAGTTTGTGGTGAGGGCCAATCACCAGGTCCTCACACGC
CTCCGTGAGCTGGATACGGCCGGACAGGAGTTGGCGTGGCTCTACCAAGAGATCCGCCACCACCTTTGGC
AGAGCTCGGAGGTCATTCAGACCTTCTGCGGACGCCAGGAACTCCTGGCCCGGCTTGGGCAGCAGCTCAG
GCACGATGACAGCAAGCAGCACACCCCCCTGGTACTCTTTGGGCCCCCAGGCATTGGAAAGACAGCCCTG
ATGTGCAAGCTGGCTGAGCAGATGCCAAGGCTGCTGGGGCACAAGACAGTGACCGTCCTGCGGCTGCTGG
GGACGTCACAAATGAGCTCAGATGCCCGTGGCCTGCTGAAGAGCATCTGCTTCCAGGTGTGCCTGGCCTA
TGGGCTGCCCTTGCCCCCTGCCCAGGTTCTGGACGCCCACACCAGGGTGGTCCAGTTTTTCCATACCCTC
CTCCACACTGTCTCTTGCAGAAACTTCGAGTCTCTCGTGCTCCTGCTGGATGCTATGGATGACCTGGACT
CTGTCCGCCATGCTCGGAGGGTTCCCTGGCTGCCTCTCAACTGCCCCCCGAGGGTGCACCTCATCCTCTC
AGCTTGCTCGGGGGCACTGGGGGTTTTGGACACCTTGCAGCGGGTGCTCCTGGACCCGGAGGCCTACTGG
GAGGTGAAGCCCCTTTCCGGAAACCAAGGCCAGCAGATGATCCAACTCCTGCTGGCAGCTGCAAGGAGGA
CGCTGAGCCCGGTGCACACAGATTTGCTCTGGGCCAGCCTCCCAGAGTGTGGGAACCCAGGGCGGCTGAG
GCTGGCGTTTGAGGAAGCCCGGAAATGGGCCTCTTTCACCGTGCCTGTCCCGCTGGCCACCACCGCAGAG
GAAGCCACGCACCAACTCTGCACCCGCCTGGAGCAGACACACGGGCAGCTCCTCGTGGCCCACGTGCTGG
GCTACATTGTGTCTTCCCGACACGGTCTCTCGGAGGCGGAGCTGAAGGATGTTTTGTCCCTGGACGACGA
GGTCCTGCAGGATGTGTACCGAGATTGGACCCCGCCCAGCAAGGAGCTGCTGCGCTTCCCGCCCCTGCTG
TGGGTGCGGCTTCGTCGGGATCTGGGATACTACTTGGCCCGGCGGCCCGTGGATGGCTTCACCCTCCTGG
CCATTGCCCACAGACAGCTGGTCGAGGTGGTCCGTGAGCGCTACCTGTCAGGATCCGAGAGAGCCAAGAG
GCATGGCGTCCTGGCCGACTTCTTCTCAGGGACCTGGAGCCAGGGTACCAAGAAGCTCATCACTCTGCCA
CTTGTGGGGAAACCACTGAACTTGGACCGAAAGGTGGCCCCGCAGCCTCTGTGGTTCTCACATACGGTTG
CAAACCTGCGGAAGCTGAAGGAGTTGCCCTATCACCTGCTTCACTCGGGCCGCCTGGAGGAGCTGAAACA
GGAGGTTCTGGGCAGCATGAGCTGGATTTCCTGCCGGGGCATCTCTGGGGGCATTGAAGACCTGCTGGAT
GACTTTGACCTGTGTGCCCCTCACCTGGACTCCCCTGAGGTTGGCCTGGTCCGTGAAGCCCTCCAGCTCT
GCCGCCCTGCTGTGGAGCTCCGAGGCATGGAGAGGAGCCTCCTGTACACAGAACTGCTGGCCAGACTCCA
TTTCTTCGCCACCTCACATCCAGCACTGGTGGGACAGCTATGCCAACAGGCCCAGAGCTGGTTCCAGTTG
TGCGCACACCCTGTGCTGGTGCCCCTCGGAGGATTCCTCCAGCCCCCGGGAGGACCCCTCCGGGCAACTC
TCAGCGGCTGTCACAAAGGCATCACCGCCATGGCATGGGGTGTGGAGGAGAAGCTGCTGGTGATTGGCAC
CCAGGATGGCATCATGGCTGTGTGGGACATGGAAGAGCAGCATGTGATCCACATGCTAACTGGACACACA
GGAGAGGTGAGGTGTGTGAAAATATTTGCCAAAGGGACCCTCGCCAACTCTGCTTCAAAGGATTACACGC
TGCACTTGTGGAACTTACTCTCTGGCCAGGAGAAATTTACCATTTGGGATGGAGGCTCAAAAAATCCCGC
TGAACCTCAGATCTGGAACCTTCATGTGGATGAGGCACACAAAGTTGTGTATTCAGCATCTGGCTCAAAG
ATCAATGCTTGGAATCTGGAAACTGCAGAGCCGGTATTCCATATCCTGGGAGATGCCTCTGATCCTTGGA
TGTGCATGGCCGTGCTGGCCTCCCAGGCCACACTGCTGACAGTGTCCAGGGATGGTGTGGTCAGTCTGTG
GAGCTCAGCTACGGGAAAACTTCAGGGGAAGCAACATATGTCCAGCATCAAAGAAGAAACACCTACCTGT
GCCGTCTCAGTCCAGAAGCAAGGAAAGCTTGTTACCGGGTTTAGCAATGGCTCCATCTCTTTGGTTTCCT
CCAAAGGGGACAGATTGCTGGAGAAGCTTCCAGATGCTGTGAGGTTCCTGGTGGTCTCTGAAGATGAGTC
CCTCCTCGCCGCAGGCTTTGGAAGATCGGTGCGGATATTCTTGGCGGACTCGAGGGGCTTTCGCCGATTC
ATGGCCATGGATCTGGAACATGAAGACATGGTGGAGACGGCTGTTTTTGGTACTGAGAACAACCTGATCA
TCACGGGGTCCCTTGATGCGCTCATTCAGGTGTGGAGTCTGTCAGAACAGGGGACCCTTCTGGACATCCT
GGAAGGCGTCGGGGCCCCCGTGAGCCTGCTGGCCCGCGGCGGGGCTTTGGTGGCATCTGCTTCCCCACAG
TCCTCATCTTTCAAGGTCTGGGATCTCAGCGATGCTCATAGGTCCCGGGTGCCTGCACCATTTCTGGACC
GCACCGGCCTCACCGCAGTGTCCCACAATGGAAGCTACGTCTACTTCCCCAAAATTGGGGACAAAAACAA
AGTCACTATTTGGGACTTGGCAGAAGGCGAGGAACAAGATTCCCTGGACACCTCCAGTGAGATCAGGTGT
CTGGAGGTTGCTGAGCAGCGCAAGCTCCTATTTACGGGCCTCGTGTCGGGGGTCGTCCTTGTGTTCCCCC
TGAATTCCAGGCAGGACGTGATATGCATTCCCCCTCCCGAGGCCCGGAAAGCAATCAACTGCATGTCCCT
GAGCAAGTGCGAGGACCGCCTGGCCATCGCCTATGACAACATCGTCCTGGTGCTGGACATCACCTCCGGG
GACCCCTGCCCGGTCATCGATGGGCCAAGATACACCTTTTACACTCAGCTGCCCGAGACCCTCTCCAGCG
TGGCCATTCTGACGGACTACCGCGTGGTCTACAGCATGACCAATGGGGACCTCTTTCTTTACGAGTGTGC
AACTTCCAAAGCGTTTCCCTTGGAGACCCACAGGAGCCGAGTTGCCTGTGTGGAGGTCAGCCACAAGGAG
CAGCTGGTGGTCAGCGGGTCTGAGGATGCCCTGCTGTGTCTCTGGGACCTGCAGGCACGCAAGTGGAAAT
TCGAGATGAGCTACACGGCACCCTGCTGA

Translation (1432 aa):
MQRGKPCRALPTLKCQTFCQRHGLMFEVVDLRWGIRNIEATDHLTTELCLEEVDRCWKTSIGPAFVALIG
DQYGPCLIPSRIDEKEWEVLRDHLTARPSDLELVARYFQRDENAFPPTYVLQAPGTGEACEPEEATLTSV
LRSGAQEARRLGLITQEQWQHYHRSVIEWEIERSLLSSEDREQGATVFLREIQDLHKHILEDCALRMVDR
LADGCLDADAQNLLSSLKSHITDMHPGVLKTHRLPWSRDLVNPKNKTHACYLKELGEQFVVRANHQVLTR
LRELDTAGQELAWLYQEIRHHLWQSSEVIQTFCGRQELLARLGQQLRHDDSKQHTPLVLFGPPGIGKTAL
MCKLAEQMPRLLGHKTVTVLRLLGTSQMSSDARGLLKSICFQVCLAYGLPLPPAQVLDAHTRVVQFFHTL
LHTVSCRNFESLVLLLDAMDDLDSVRHARRVPWLPLNCPPRVHLILSACSGALGVLDTLQRVLLDPEAYW
EVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGRLRLAFEEARKWASFTVPVPLATTAE
EATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLL
WVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFSGTWSQGTKKLITLP
LVGKPLNLDRKVAPQPLWFSHTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLD
DFDLCAPHLDSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQL
CAHPVLVPLGGFLQPPGGPLRATLSGCHKGITAMAWGVEEKLLVIGTQDGIMAVWDMEEQHVIHMLTGHT
GEVRCVKIFAKGTLANSASKDYTLHLWNLLSGQEKFTIWDGGSKNPAEPQIWNLHVDEAHKVVYSASGSK
INAWNLETAEPVFHILGDASDPWMCMAVLASQATLLTVSRDGVVSLWSSATGKLQGKQHMSSIKEETPTC
AVSVQKQGKLVTGFSNGSISLVSSKGDRLLEKLPDAVRFLVVSEDESLLAAGFGRSVRIFLADSRGFRRF
MAMDLEHEDMVETAVFGTENNLIITGSLDALIQVWSLSEQGTLLDILEGVGAPVSLLARGGALVASASPQ
SSSFKVWDLSDAHRSRVPAPFLDRTGLTAVSHNGSYVYFPKIGDKNKVTIWDLAEGEEQDSLDTSSEIRC
LEVAEQRKLLFTGLVSGVVLVFPLNSRQDVICIPPPEARKAINCMSLSKCEDRLAIAYDNIVLVLDITSG
DPCPVIDGPRYTFYTQLPETLSSVAILTDYRVVYSMTNGDLFLYECATSKAFPLETHRSRVACVEVSHKE
QLVVSGSEDALLCLWDLQARKWKFEMSYTAPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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