NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31923.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31923.3 Public Homo sapiens 12 ARL6IP4 24 110 108 CCDS HistoryNCBI Gene:51329Re-query CCDS DB by CCDS ID:31923.3Re-query CCDS DB by GeneID:51329See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 31923.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31923.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315580.10 ENSP00000313422.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315580.10Link to Ensembl Protein Viewer:ENSP00000313422.7Re-query CCDS DB by Nucleotide ID:ENST00000315580Re-query CCDS DB by Protein ID:ENSP00000313422
Original member Current member NCBI NM_001400282.1 NP_001387211.1 Accepted alive Link to Nucleotide Sequence:NM_001400282.1Link to Protein Sequence:NP_001387211.1Re-query CCDS DB by Nucleotide ID:NM_001400282Re-query CCDS DB by Protein ID:NP_001387211Link to BLAST:NP_001387211.1
Original member Current member NCBI NM_001400310.1 NP_001387239.1 Accepted alive Link to Nucleotide Sequence:NM_001400310.1Link to Protein Sequence:NP_001387239.1Re-query CCDS DB by Nucleotide ID:NM_001400310Re-query CCDS DB by Protein ID:NP_001387239Link to BLAST:NP_001387239.1
Original member Current member NCBI NM_001400315.1 NP_001387244.1 Accepted alive Link to Nucleotide Sequence:NM_001400315.1Link to Protein Sequence:NP_001387244.1Re-query CCDS DB by Nucleotide ID:NM_001400315Re-query CCDS DB by Protein ID:NP_001387244Link to BLAST:NP_001387244.1
Original member Current member NCBI NM_001400316.1 NP_001387245.1 Accepted alive Link to Nucleotide Sequence:NM_001400316.1Link to Protein Sequence:NP_001387245.1Re-query CCDS DB by Nucleotide ID:NM_001400316Re-query CCDS DB by Protein ID:NP_001387245Link to BLAST:NP_001387245.1
Original member Current member NCBI NM_018694.4 NP_061164.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018694.4Link to Protein Sequence:NP_061164.4Re-query CCDS DB by Nucleotide ID:NM_018694Re-query CCDS DB by Protein ID:NP_061164Link to BLAST:NP_061164.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001387211.1 237 Q66PJ3-8 237 100% 0 0
NP_001387239.1 237 Q66PJ3-8 237 100% 0 0
NP_001387244.1 237 Q66PJ3-8 237 100% 0 0
NP_001387245.1 237 Q66PJ3-8 237 100% 0 0
NP_061164.4 237 Q66PJ3-8 237 100% 0 0

Chromosomal Locations for CCDS 31923.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122981140 122981299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122981571 122981879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122981957 122982074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122982469 122982538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122982620 122982676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCTCACGTCGGCTCCCGCAAGCGCTCGAGGAGTCGCAGCCGGTCCCGGGGACGGGGGTCGGAAAAGA
GAAAGAAGAAGAGCAGGAAAGACACCTCGAGGAACTGCTCGGCCTCCACATCCCAAGGTCGCAAGGCCAG
CACGGCCCCTGGGGCGGAGGCCTCACCTTCTCCCTGCATCACAGAGAGAAGCAAGCAGAAGGCCCGGAGG
AGAACAAGATCCAGCTCCTCCTCCTCTTCTTCCAGTTCTTCTAGCTCCTCTTCTTCCTCCTCGTCCTCCT
CCTCTTCCTCCAGTGATGGCCGGAAGAAGCGGGGGAAGTACAAGGACAAGAGGAGGAAGAAGAAGAAGAA
GAGGAAGAAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACAGCAGGTGGAGGCTCTGCCGGGCCCC
TCGCTGGACCAGTGGCACCGATCAGCTGGGGAGGAAGAGGATGGCCCAGTCCTGACGGATGAGCAGAAGT
CCCGAATCCAGGCCATGAAGCCCATGACCAAGGAGGAGTGGGATGCCCGGCAGAGCATCATCCGCAAGGT
GGTGGACCCTGAGACGGGGCGCACCAGGCTTATTAAGGGAGATGGCGAGGTCCTAGAGGAAATCGTAACC
AAAGAACGACACAGAGAGATCAACAAGCAAGCCACCCGAGGGGACTGCCTGGCCTTCCAGATGCGAGCTG
GGTTGCTTCCCTGA

Translation (237 aa):
MAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARR
RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGP
SLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVT
KERHREINKQATRGDCLAFQMRAGLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH