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Report for CCDS31710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31710.1 Public Homo sapiens 11 OR8B4 24 110 108 CCDS HistoryNCBI Gene:283162Re-query CCDS DB by CCDS ID:31710.1Re-query CCDS DB by GeneID:283162See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31710.1
This olfactory receptor gene is a segregating pseudogene (PMID:22908908), where some individuals have an allele that encodes a functional olfactory receptor, while other individuals have an allele that is predicted to be non-functional. This CCDS is being retained because the Classifier for Olfactory Receptor Pseudogenes (CORP) predicts the reference genome allele to be functional.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 31710.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356130.7 ENSP00000348449.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356130.7Link to Ensembl Protein Viewer:ENSP00000348449.3Re-query CCDS DB by Nucleotide ID:ENST00000356130Re-query CCDS DB by Protein ID:ENSP00000348449
Original member Current member NCBI NM_001005196.1 NP_001005196.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005196.1Link to Protein Sequence:NP_001005196.1Re-query CCDS DB by Nucleotide ID:NM_001005196Re-query CCDS DB by Protein ID:NP_001005196Link to BLAST:NP_001005196.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005196.1 309 Q96RC9 309 100% 0 0

Chromosomal Locations for CCDS 31710.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124423942 124424871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGACTCTGAGAAACAGCTCCTCAGTGACTGAGTTTATCCTTGTGGGATTATCAGAACAGCCAGAGCTCC
AGCTCCCTCTTTTCCTTCTATTCTTAGGGATCTATGTGTTCACTGTGGTGGGCAACTTGGGCTTGATCAC
CTTAATTGGGATAAATCCTAGCCTTCACACCCCCATGTACTTTTTCCTCTTCAACTTGTCCTTTATAGAT
CTCTGTTATTCCTGTGTGTTTACCCCCAAAATGCTGAATGACTTTGTTTCAGAAAGTATCATCTCTTATG
TGGGATGTATGACTCAGCTATTTTTCTTCTGTTTCTTTGTCAATTCTGAGTGCTATGTGTTGGTATCAAT
GGCCTATGATCGCTATGTGGCCATCTGCAACCCCCTGCTCTACATGGTCACCATGTCCCCAAGGGTCTGC
TTTCTGCTGATGTTTGGTTCCTATGTGGTAGGGTTTGCTGGGGCCATGGCCCACACTGGAAGCATGCTGC
GACTGACCTTCTGTGATTCCAACGTCATTGACCATTATCTGTGTGACGTTCTCCCCCTCTTGCAGCTCTC
CTGCACCAGCACCCATGTCAGTGAGCTGGTATTTTTCATTGTTGTTGGAGTAATCACCATGCTATCCAGC
ATAAGCATCGTCATCTCTTACGCTTTGATACTCTCCAACATCCTCTGTATTCCTTCTGCAGAGGGCAGAT
CCAAAGCCTTTAGCACATGGGGCTCCCACATAATTGCTGTTGCTCTGTTTTTTGGGTCAGGGACATTCAC
CTACTTAACAACATCTTTTCCTGGCTCTATGAACCATGGCAGATTTGCCTCAGTCTTTTACACCAATGTG
GTTCCCATGCTTAACCCTTCGATCTACAGTTTGAGGAATAAGGATGATAAACTTGCCCTGGGCAAAACCC
TGAAGAGAGTGCTCTTCTAA

Translation (309 aa):
MTLRNSSSVTEFILVGLSEQPELQLPLFLLFLGIYVFTVVGNLGLITLIGINPSLHTPMYFFLFNLSFID
LCYSCVFTPKMLNDFVSESIISYVGCMTQLFFFCFFVNSECYVLVSMAYDRYVAICNPLLYMVTMSPRVC
FLLMFGSYVVGFAGAMAHTGSMLRLTFCDSNVIDHYLCDVLPLLQLSCTSTHVSELVFFIVVGVITMLSS
ISIVISYALILSNILCIPSAEGRSKAFSTWGSHIIAVALFFGSGTFTYLTTSFPGSMNHGRFASVFYTNV
VPMLNPSIYSLRNKDDKLALGKTLKRVLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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