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Report for CCDS31353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31353.1 Public Homo sapiens 11 OR52M1 24 110 108 CCDS HistoryNCBI Gene:119772Re-query CCDS DB by CCDS ID:31353.1Re-query CCDS DB by GeneID:119772See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360213.1 ENSP00000353343.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360213.1Link to Ensembl Protein Viewer:ENSP00000353343.1Re-query CCDS DB by Nucleotide ID:ENST00000360213Re-query CCDS DB by Protein ID:ENSP00000353343
Original member Current member NCBI NM_001004137.1 NP_001004137.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004137.1Link to Protein Sequence:NP_001004137.1Re-query CCDS DB by Nucleotide ID:NM_001004137Re-query CCDS DB by Protein ID:NP_001004137Link to BLAST:NP_001004137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004137.1 317 Q8NGK5 317 100% 0 0

Chromosomal Locations for CCDS 31353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4545191 4546144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCTCACTTTTCATAATGTCTGCTCAGTACCCAGCTCCTTCTGGCTCACTGGCATCCCAGGGCTGGAGT
CCCTACACGTCTGGCTCTCCATCCCCTTTGGCTCCATGTACCTGGTGGCTGTGGTGGGGAATGTGACCAT
CCTGGCTGTGGTAAAGATAGAACGCAGCCTGCACCAGCCCATGTACTTTTTCTTGTGCATGTTGGCTGCC
ATTGACCTGGTTCTGTCTACTTCCACTATACCCAAACTTCTGGGAATCTTCTGGTTCGGTGCTTGTGACA
TTGGCCTGGACGCCTGCTTGGGCCAAATGTTCCTTATCCACTGCTTTGCCACTGTTGAGTCAGGCATCTT
CCTTGCCATGGCTTTTGATCGCTACGTGGCCATCTGCAACCCACTACGTCATAGCATGGTGCTCACTTAT
ACAGTGGTGGGTCGTTTGGGGCTTGTTTCTCTCCTCCGGGGTGTTCTCTACATTGGACCTCTGCCTCTGA
TGATCCGCCTGCGGCTGCCCCTTTATAAAACCCATGTTATCTCCCACTCCTACTGTGAGCACATGGCTGT
AGTTGCCTTGACATGTGGCGACAGCAGGGTCAATAATGTCTATGGGCTGAGCATCGGCTTTCTGGTGTTG
ATCCTGGACTCAGTGGCTATTGCTGCATCCTATGTGATGATTTTCAGGGCCGTGATGGGGTTAGCCACTC
CTGAGGCTAGGCTTAAAACCCTGGGGACATGCGCTTCTCACCTCTGTGCCATCCTGATCTTTTATGTTCC
CATTGCTGTTTCTTCCCTGATTCACCGATTTGGTCAGTGTGTGCCTCCTCCAGTCCACACTCTGCTGGCC
AACTTCTATCTCCTCATTCCTCCAATCCTCAATCCCATTGTCTATGCTGTTCGCACCAAGCAGATCCGAG
AGAGCCTTCTCCAAATACCAAGGATAGAAATGAAGATTAGATGA

Translation (317 aa):
MLTFHNVCSVPSSFWLTGIPGLESLHVWLSIPFGSMYLVAVVGNVTILAVVKIERSLHQPMYFFLCMLAA
IDLVLSTSTIPKLLGIFWFGACDIGLDACLGQMFLIHCFATVESGIFLAMAFDRYVAICNPLRHSMVLTY
TVVGRLGLVSLLRGVLYIGPLPLMIRLRLPLYKTHVISHSYCEHMAVVALTCGDSRVNNVYGLSIGFLVL
ILDSVAIAASYVMIFRAVMGLATPEARLKTLGTCASHLCAILIFYVPIAVSSLIHRFGQCVPPPVHTLLA
NFYLLIPPILNPIVYAVRTKQIRESLLQIPRIEMKIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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