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Report for CCDS31115.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31115.2 Under review, update Homo sapiens 1 OR2T1 24 110 108 CCDS HistoryNCBI Gene:26696Re-query CCDS DB by CCDS ID:31115.2Re-query CCDS DB by GeneID:26696See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31115.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642005.1 ENSP00000493164.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642005.1Link to Ensembl Protein Viewer:ENSP00000493164.1Re-query CCDS DB by Nucleotide ID:ENST00000642005Re-query CCDS DB by Protein ID:ENSP00000493164
Original member Current member NCBI NM_030904.2 NP_112166.2 MANE Select Pending alive Link to Nucleotide Sequence:NM_030904.2Link to Protein Sequence:NP_112166.2Re-query CCDS DB by Nucleotide ID:NM_030904Re-query CCDS DB by Protein ID:NP_112166Link to BLAST:NP_112166.2

Chromosomal Locations for CCDS 31115.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248406148 248407104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGAAGAGTACAACACATCCTCTACAGACTTCACTTTCATGGGGCTGTTCAACAGAAAGGAAACCTCAG
GTCTTATTTTTGCCATCATCTCTATCATCTTCTTCACCGCACTGATGGCCAATGGGGTTATGATCTTCCT
GATCCAAACAGATTTGCGCCTTCATACACCCATGTACTTCCTCCTCAGCCACCTTTCCTTAATTGACATG
ATGTATATTTCCACTATTGTGCCTAAGATGCTGGTTAATTACCTGCTGGATCAAAGGACCATTTCCTTTG
TGGGGTGCACAGCTCAACACTTCCTCTACCTTACCCTTGTGGGAGCTGAATTCTTCCTGCTGGGCCTCAT
GGCCTATGACCGCTATGTGGCCATTTGCAACCCTCTGAGATACCCTGTCCTCATGAGCCGCCGGGTCTGT
TGGATGATTATAGCAGGTTCCTGGTTTGGGGGCTCTTTGGATGGCTTCCTCCTAACCCCCATCACCATGA
GCTTTCCCTTCTGCAATTCCCGGGAGATTAACCACTTCTTCTGTGAGGCACCAGCAGTCCTGAAGTTGGC
ATGTGCAGACACAGCCCTCTACGAGACAGTGATGTATGTGTGCTGTGTTTTGATGCTGCTGATTCCTTTC
TCTGTAGTCCTTGCTTCCTATGCCCGAATCCTGACTACAGTTCAGTGCATGAGCTCAGTGGAGGGCAGGA
AGAAGGCATTTGCCACTTGCTCATCCCACATGACTGTGGTGTCCTTGTTCTACGGGGCTGCCATGTACAC
CTACATGCTGCCACATTCTTACCACAAGCCAGCCCAGGACAAAGTCCTCTCTGTGTTTTACACCATTCTC
ACACCCATGCTGAACCCCCTCATCTACAGCCTTAGAAACAAGGATGTGACTGGAGCTCTGAAGAGGGCCT
TGGGGAGGTTCAAGGGTCCTCAAAGGGTGTCAGGAGGTGTCTTTTGA

Translation (318 aa):
MEEYNTSSTDFTFMGLFNRKETSGLIFAIISIIFFTALMANGVMIFLIQTDLRLHTPMYFLLSHLSLIDM
MYISTIVPKMLVNYLLDQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPLRYPVLMSRRVC
WMIIAGSWFGGSLDGFLLTPITMSFPFCNSREINHFFCEAPAVLKLACADTALYETVMYVCCVLMLLIPF
SVVLASYARILTTVQCMSSVEGRKKAFATCSSHMTVVSLFYGAAMYTYMLPHSYHKPAQDKVLSVFYTIL
TPMLNPLIYSLRNKDVTGALKRALGRFKGPQRVSGGVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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