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Report for CCDS3110.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3110.2 Public Homo sapiens 3 RBP1 24 110 108 CCDS HistoryNCBI Gene:5947Re-query CCDS DB by CCDS ID:3110.2Re-query CCDS DB by GeneID:5947See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3110.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.The next downstream ATG (186 basepairs downstream) may also be used as the start codon, according to Edman degradation experiments in orthologous species.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3110.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232219.6 ENSP00000232219.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000232219.6Link to Ensembl Protein Viewer:ENSP00000232219.2Re-query CCDS DB by Nucleotide ID:ENST00000232219Re-query CCDS DB by Protein ID:ENSP00000232219
Original member Current member EBI ENST00000672186.1 ENSP00000500931.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000672186.1Link to Ensembl Protein Viewer:ENSP00000500931.1Re-query CCDS DB by Nucleotide ID:ENST00000672186Re-query CCDS DB by Protein ID:ENSP00000500931
Original member Current member NCBI NM_002899.5 NP_002890.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002899.5Link to Protein Sequence:NP_002890.2Re-query CCDS DB by Nucleotide ID:NM_002899Re-query CCDS DB by Protein ID:NP_002890Link to BLAST:NP_002890.2

Chromosomal Locations for CCDS 3110.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 139517627 139517680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139518421 139518522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139538781 139538959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139539460 139539718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGATCCTCCCGCAGGCTTTGTGCGCGCTGGGAATCCAGCTGTCGCCGCCCCGCAGAGCCCCCTGTCCC
CGGAGGGCGCTCATTTCCGGGCCGCCCACCACCCGCGTAGCACCGGCAGCCGCTGTCCCGGCAGTCTCCA
GCCGTCCCGCCCGCTTGTGGCCAACTGGCTCCAGTCACTCCCCGAAATGCCAGTCGACTTCACTGGGTAC
TGGAAGATGTTGGTCAACGAGAATTTCGAGGAGTACCTGCGCGCCCTCGACGTCAATGTGGCCTTGCGCA
AAATCGCCAACTTGCTGAAGCCAGACAAAGAGATCGTGCAGGACGGTGACCATATGATCATCCGCACGCT
GAGCACTTTTAGGAACTACATCATGGACTTCCAGGTTGGGAAGGAGTTTGAGGAGGATCTGACAGGCATA
GATGACCGCAAGTGCATGACAACAGTGAGCTGGGACGGAGACAAGCTCCAGTGTGTGCAGAAGGGTGAGA
AGGAGGGGCGTGGCTGGACCCAGTGGATCGAGGGTGATGAGCTGCACCTGGAGATGAGAGTGGAAGGTGT
GGTCTGCAAGCAAGTATTCAAGAAGGTGCAGTGA

Translation (197 aa):
MDPPAGFVRAGNPAVAAPQSPLSPEGAHFRAAHHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGY
WKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGI
DDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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