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Report for CCDS3079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3079.1 Public Homo sapiens 3 CDV3 24 110 108 CCDS HistoryNCBI Gene:55573Re-query CCDS DB by CCDS ID:3079.1Re-query CCDS DB by GeneID:55573See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3079.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264993.8 ENSP00000264993.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264993.8Link to Ensembl Protein Viewer:ENSP00000264993.3Re-query CCDS DB by Nucleotide ID:ENST00000264993Re-query CCDS DB by Protein ID:ENSP00000264993
Original member Current member NCBI NM_017548.5 NP_060018.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017548.5Link to Protein Sequence:NP_060018.1Re-query CCDS DB by Nucleotide ID:NM_017548Re-query CCDS DB by Protein ID:NP_060018Link to BLAST:NP_060018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060018.1 258 Q9UKY7-1 258 100% 0 0

Chromosomal Locations for CCDS 3079.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133574045 133574284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133575039 133575115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133584002 133584150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133586563 133586722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133587896 133588046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGCTGAGACGGAGGAGCGGAGCCTGGACAACTTCTTTGCCAAGAGGGACAAGAAGAAGAAGAAGGAGC
GGAGCAACCGGGCGGCGAGTGCCGCGGGCGCAGCGGGCAGCGCCGGCGGAAGCAGTGGAGCCGCGGGTGC
GGCGGGCGGCGGGGCGGGCGCGGGGACCCGGCCGGGTGACGGCGGGACCGCCAGCGCGGGGGCTGCGGGC
CCAGGGGCCGCCACCAAGGCTGTGACGAAGGACGAAGATGAATGGAAAGAATTGGAGCAAAAAGAGGTTG
ATTACAGCGGCCTCAGGGTTCAGGCAATGCAAATAAGCAGTGAAAAGGAAGAAGACGATAATGAAAAGAG
ACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGAGGTATGGAAAAATCTTCAGGTCCC
TGGAATAAAACAGCTCCAGTACAAGCACCTCCTGCTCCAGTAATTGTTACAGAAACCCCAGAACCAGCGA
TGACTAGTGGTGTGTATAGGCCTCCTGGGGCCAGGTTAACCACAACAAGGAAAACACCACAAGGACCACC
AGAAATCTACAGTGATACACAGTTCCCATCCCTGCAGTCAACTGCCAAGCATGTAGAAAGCCGGAAGGAT
AAAGAAATGGAGAAGAGCTTTGAAGTAGTAAGACACAAAAATAGAGGTAGGGATGAGGTTTCAAAAAACC
AGGCCCTTAAACTTCAGCTAGACAACCAATATGCTGTGCTTGAAAATCAGAAAAGCAGCCACTCACAATA
CAATTAA

Translation (258 aa):
MAETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAG
PGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGP
WNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKD
KEMEKSFEVVRHKNRGRDEVSKNQALKLQLDNQYAVLENQKSSHSQYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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