NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30504.1 Public Mus musculus X Phka2 23 108 98 CCDS HistoryNCBI Gene:110094Re-query CCDS DB by CCDS ID:30504.1Re-query CCDS DB by GeneID:110094See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033652.8 ENSMUSP00000033652.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033652.8Link to Ensembl Protein Viewer:ENSMUSP00000033652.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033652Re-query CCDS DB by Protein ID:ENSMUSP00000033652
Original member Current member EBI ENSMUST00000112377.7 ENSMUSP00000107996.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112377.7Link to Ensembl Protein Viewer:ENSMUSP00000107996.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112377Re-query CCDS DB by Protein ID:ENSMUSP00000107996
Original member Current member NCBI NM_001177879.2 NP_001171350.1 Accepted alive Link to Nucleotide Sequence:NM_001177879.2Link to Protein Sequence:NP_001171350.1Re-query CCDS DB by Nucleotide ID:NM_001177879Re-query CCDS DB by Protein ID:NP_001171350Link to BLAST:NP_001171350.1
Original member Current member NCBI NM_172783.4 NP_766371.1 Accepted alive Link to Nucleotide Sequence:NM_172783.4Link to Protein Sequence:NP_766371.1Re-query CCDS DB by Nucleotide ID:NM_172783Re-query CCDS DB by Protein ID:NP_766371Link to BLAST:NP_766371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171350.1 1235 Q8BWJ3 1235 100% 0 0
NP_766371.1 1235 Q8BWJ3 1235 100% 0 0

Chromosomal Locations for CCDS 30504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 160502827 160502904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160523272 160523430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160527730 160527777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160528847 160529015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160529915 160529997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160531108 160531188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160532979 160533077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160541369 160541515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160543634 160543687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160544212 160544334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160549175 160549270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160552713 160552820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160554301 160554379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160557686 160557820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160558467 160558576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160559731 160559875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160560100 160560178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160562723 160562892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160564186 160564359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160574643 160574731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160575780 160575913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160576602 160576758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160577496 160577575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160577768 160577846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160577948 160578077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160578593 160578694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160581161 160581279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160582967 160582996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160584464 160584517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160586779 160586949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160588965 160589018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160590168 160590368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160590939 160591109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGCGGAGCAGGAGCAATTCTGGGGTCCGCCTGGACGGGTACGCGAGGCTGGTGCAGCAAACCATCCTGT
GTTACCAGAACCCAGTCACTGGGCTGTTATCAGCCAGCCATGACCAGAAGGATGCCTGGGTACGGGACAA
TATCTATAGCATATTGGCTGTTTGGGGCCTGGGCATGGCCTACCGCAAGAATGCTGACCGTGATGAGGAT
AAAGCCAAGGCCTATGAGTTGGAACAGAACGTAGTGAAGCTGATGCGAGGTCTTCTCCAGTGTATGATGA
GGCAGGTGGACAAAGTGGAGAAGTTCAAGCACACTCAGAGTACCAAGGACAGTCTACATGCCAAGTACAA
CACTGCCACATGTAGCACTGTGGTGGGTGATGACCAGTGGGGCCACCTCCAGGTGGATGCCACCTCTCTC
TTCCTCCTGTTCCTGGCCCAGATGACAGCCTCAGGTTTGCGTATTATTTTTACCCTTGACGAAGTGGCCT
TCATACAGAATCTTGTCTTCTACATAGAAGCTGCATATAAAGTTGCTGATTATGGGATGTGGGAGCGTGG
AGATAAAACCAATCAGGGCATTCCGGAACTGAATGCAAGCTCGGTGGGAGTGGCCAAGGCAGCACTTGAG
GCCATTGATGAACTAGATCTTTTTGGAGCCCATGGAGGACGCAAATCGGTGATCCACGTCCTACCTGATG
AAGTTGAGCACTGCCAGTCAATTCTTTTCTCCATGTTGCCAAGAGCATCAACATCTAAAGAAATCGATGC
TGGACTTCTTTCTATTATTTCTTTCCCGGCCTTTGCAGTAGAAGATGTGAACCTTGTGAATGTGACCAAA
AATGAAATTATTTCCAAGCTTCAGGGGCGGTATGGATGCTGTCGCTTCCTTCGAGATGGCTATAAAACCC
CAAGAGAGGATCCACACCGATTGCATTATGACCCTGCCGAACTTAAGCTCTTTGAAAACATTGAATGTGA
ATGGCCTGTGTTCTGGACTTATTTAATCATAGATGGAATCTTCAATGGTGATGCTGTTCAGGTCCAAGAA
TACCGAGAAGCCTTGGAGGGAATATTAATCAGAGGCAAAGATGGGATCCACTTGGTGCCAGAACTCTATG
CCATCCCACCAGACAAGGTGGATGAAGAGTATAAGAATCCACACACAGTAGACCGAGTTCCACTGGGAAA
GCTGCCCCATCTTTGGGGACAGTCCTTGTACATCCTCAGCTCACTGCTAGCAGAGGGATTCCTTGCCACG
GGTGAAATCGATCCCTTAAATAGAAGATTTTCTACTTCAGTCAAACCTGATGTTGTAGTGCAAGTTGCTG
TTTTGGCAGAAAACAGTCACATTAAGGGGCTGTTGAAGGAGCATGGAATGACTGTCCAGAGCATTGCTGA
TGTGCATCCGATTCGAGTCCAGCCAGGCCGAATTCTTAGTCACATATATGCCAAACTTGGACGAAATAAG
AATATGAAATTGAGTGGTCGACCGTATCGGCACATTGGTGTCCTTGGCACCTCTAAACTCTATGTGATTA
GGAATCACATCTTCACTTTTACACCCCAGTTCACTGACCAGCATCACTTCTACCTGGCCCTGGACAATGA
GATGATTGTGGAGATGCTGAGGATCGAACTTGCCTATCTGTGCACCTGCTGGCGGATGACCGGCCGACCC
ACTCTCACCTTCCCTGTCACGCATACCATGCTCACAAATGATGGATCAGACATTCATCCTGCAGTTCTTT
CTACAATTAGAAAACTAGAAGATGGCTATTTTGGAGGTGCTAGAGTAAAACTAGGAAATCTGGCAGAGTT
CCTTACTACCTCATTCTACACACACCTGACCTTCCTGGATCCAGACTGCGATGAGAAGTTGTTTGGTGAC
ATCACTGATAGGAGCTTTAGTCCTGACAGTGAGCCAGACCTGGGAGGATACCTGGAAGACAGCAGTCCTC
AAGAAAGCCAAGATGAACTTGACCAGTATATCAGCCACCTTCTTCAAAGCACATCCTTGAAGTGTTACCT
GCCCCCTCTTTGTAAGAAGTCAGAAGACAGCCATTTTTTCAGTGCTATTCACTCCACTCGGGACATACTT
TCTGTGATGGCCAAAGCGAAGGGTTTGGAAACTACATTTTTTCCCATGATTTTGCCAACTAAAGTTCTAA
GTGGACACCGTAAGTCACTGAATCTTGTTGACTCCCCTCAGCCACTCCTAAAGACGACTCCTGAATATGA
CTACCAGTGGCCCAGAGACGACCATGATGAAGTGGACTGTGAGAAGCTAGTTGGGCAACTGAAAGACTGC
TCAAACCTACAGGACCAAGCAGACATTCTGTACATTCTTTATGTAATGAAGGGTCCCCGCTGGGATACCA
ATTTGTTTGGGCAGCATGGAGTCACTGTTCACAGTCTTCTCAGCGAGCTCTATGGAAAAGCTGGCCTAAA
CCAAGAATGGAGTTTGATTCGCTACATTTCAGGCCTGCTCAGGAAGAAAGTGGAGGTCCTGGCTGAGGCC
TGTGCAGATCTGCTGTCCCACCAGAAGCAGCTTACAGTAGGACTGCCCCCTGAGCCCCGGGAGAAGACCA
TATCTACGCCTCTACCCCCAGAGGAGCTCACAGAACTCATATATGAAGCCAGTGGACAGGACATCAGCAT
TGCTGTCCTCACACAGGAGATCGTGGTTTACCTGGCCATGTATGTCCGGGCCCAGCCTAGCCTCTTTGCA
GAGATGCTCAGACTCCGGATTGGATTGATCATCCAGGTGATGGCCACAGAGCTGGCTCGGAGCCTGAACT
GCTCAGGAAAAGAAGCTTCGGAGAGCTTGATGAACCTCAGCCCTTTCGACATGAAGAGCCTTCTGCATCA
TATCCTGAGTGGGAAGGAGTTCGGTGTGGAGAGAAGCGTGCGCCCAATACACTCCTCCATGTCCAGCCCT
GCCATCTCCATCCATGAGGTGGGTCATACTGGAGCCACCAAAACTGAGCGGAGTGGCATCACCAGACTGA
GGAGTGAGATGAAACAGATGAATAGGCGAGCTAGTGCTGATGAGCAGTTCTTTCCTTTGGGCCAGACCAT
GTCCAACAGTTTGCATTCCATCAAGTCTGTGAGGTCCAGCACCCCATCCTCCCCGACAGGCACATCATCT
ACAGACTCTGGAGGACAGCACCTGGGCTGGGGAGAACAGCAGGGCCAGTGGCTGCGCCGGAGAAGGTTGG
ATGGGGCCATTAACAGGGTCCCCGTGGGATTCTACCAGAAAGTGTGGAAGATCCTTCAGAAGTGCCATGG
CCTGTCCATCGATGGTTACGTCCTCCCATCCTCGACAACCCAAGAGATGACCCCTTGTGAGATCAAGTTT
GCCGTCCATGTGGAGTCAGTGCTCAACCGTGTGTCCCAGCCTGAGTATCGGCAGCTACTGGTAGAAGCCA
TCATGGTACTGACTCTGCTCTCAGATACCGAAATGGACAGTATCGGGGGCATCATCCATGTGGACCAGAT
AGTGCAGCTGGCCAATCAGCTGTTCCTGCAGGACCAGGTGTCATTTGGAACCACAGACATCCTGGAAAAA
GACCAAGCCACAGGAATTTGCCACCTCTTTTATGACAGTGCTCCTAGTGGGGCTTATGGTACAATGACCT
ACCTAACAAAAGCGGTCGCTTCTCATTTGCAGGAACTGCTGCCCAGTTCAGGCTGCCAGATGCAGTAG

Translation (1235 aa):
MRSRSNSGVRLDGYARLVQQTILCYQNPVTGLLSASHDQKDAWVRDNIYSILAVWGLGMAYRKNADRDED
KAKAYELEQNVVKLMRGLLQCMMRQVDKVEKFKHTQSTKDSLHAKYNTATCSTVVGDDQWGHLQVDATSL
FLLFLAQMTASGLRIIFTLDEVAFIQNLVFYIEAAYKVADYGMWERGDKTNQGIPELNASSVGVAKAALE
AIDELDLFGAHGGRKSVIHVLPDEVEHCQSILFSMLPRASTSKEIDAGLLSIISFPAFAVEDVNLVNVTK
NEIISKLQGRYGCCRFLRDGYKTPREDPHRLHYDPAELKLFENIECEWPVFWTYLIIDGIFNGDAVQVQE
YREALEGILIRGKDGIHLVPELYAIPPDKVDEEYKNPHTVDRVPLGKLPHLWGQSLYILSSLLAEGFLAT
GEIDPLNRRFSTSVKPDVVVQVAVLAENSHIKGLLKEHGMTVQSIADVHPIRVQPGRILSHIYAKLGRNK
NMKLSGRPYRHIGVLGTSKLYVIRNHIFTFTPQFTDQHHFYLALDNEMIVEMLRIELAYLCTCWRMTGRP
TLTFPVTHTMLTNDGSDIHPAVLSTIRKLEDGYFGGARVKLGNLAEFLTTSFYTHLTFLDPDCDEKLFGD
ITDRSFSPDSEPDLGGYLEDSSPQESQDELDQYISHLLQSTSLKCYLPPLCKKSEDSHFFSAIHSTRDIL
SVMAKAKGLETTFFPMILPTKVLSGHRKSLNLVDSPQPLLKTTPEYDYQWPRDDHDEVDCEKLVGQLKDC
SNLQDQADILYILYVMKGPRWDTNLFGQHGVTVHSLLSELYGKAGLNQEWSLIRYISGLLRKKVEVLAEA
CADLLSHQKQLTVGLPPEPREKTISTPLPPEELTELIYEASGQDISIAVLTQEIVVYLAMYVRAQPSLFA
EMLRLRIGLIIQVMATELARSLNCSGKEASESLMNLSPFDMKSLLHHILSGKEFGVERSVRPIHSSMSSP
AISIHEVGHTGATKTERSGITRLRSEMKQMNRRASADEQFFPLGQTMSNSLHSIKSVRSSTPSSPTGTSS
TDSGGQHLGWGEQQGQWLRRRRLDGAINRVPVGFYQKVWKILQKCHGLSIDGYVLPSSTTQEMTPCEIKF
AVHVESVLNRVSQPEYRQLLVEAIMVLTLLSDTEMDSIGGIIHVDQIVQLANQLFLQDQVSFGTTDILEK
DQATGICHLFYDSAPSGAYGTMTYLTKAVASHLQELLPSSGCQMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH