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Report for CCDS30344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30344.1 Public Mus musculus X Rtl3 23 108 98 CCDS HistoryNCBI Gene:213436Re-query CCDS DB by CCDS ID:30344.1Re-query CCDS DB by GeneID:213436See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062010.9 ENSMUSP00000060157.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062010.9Link to Ensembl Protein Viewer:ENSMUSP00000060157.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000062010Re-query CCDS DB by Protein ID:ENSMUSP00000060157
Original member Current member NCBI NM_199468.2 NP_955762.1 Accepted alive Link to Nucleotide Sequence:NM_199468.2Link to Protein Sequence:NP_955762.1Re-query CCDS DB by Nucleotide ID:NM_199468Re-query CCDS DB by Protein ID:NP_955762Link to BLAST:NP_955762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955762.1 553 Q6P1Y1 553 100% 0 0

Chromosomal Locations for CCDS 30344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106837993 106839654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGTAGAGGACTTAGCAGCTTCCTATGTTACTCTGAAATTGGAGAATGAAATTCTGCAGGCTCAAGTGA
AAAGGCTCATGGAAGAAAATGCTGCCCTCCAGGCCCAGATACCAGAGCTCCAGAAATCCGGAGCAGTCAA
AGAGCATGAACCACTCCGAAAGCCCTCAGAGGCCCAAGAGCCCCCAGAGTCCCCAGAGTTCCCAGCAGCC
AGGGAGTCACAGAACCCCTGGGAACCCCCAGCAACCACAGAGCCCGGGGAGCCCACAAAGATCAGAGAGC
CCAGGGAACCCTCAGCCATCAGTGAGCTCAGGGAACCCCCAGAGATCAAGGAGCCCCAGGAGCCCCCAGA
GACCAATGAGTCTGGAGAATCCTCAGCCATCACAGAGTTCAGGGGATCCCCAGAGATCAAGGAGCCCCAT
TTGCCCCCAAAGTCCAAGGAGTACTGGGGACCTCAGGAGCTTCCAATGGTCAAGGAATCCTGGGAGCCCC
CAGAGGCCCTGGATTCCACAGCCTGGAAGCCACCAGCAGTCAAGGAATCCCAGGAGATCCAGAAGGCTCT
GGAGTCCCCAGCAACCCAGAGGCCCCAGGCGTCCCCAAGGGGTTATGATCTCCCAGCAGTCTGTGAGGCG
GAGCCCACAGACAACCAGGGTACCCCAGCCCTCAAGGAGCTTCAGAGTCCACAGCTCCACAACCCTACAA
ATGATGAGGAGTCTCAGACGGTTCCAGAATACCAGGAGACCTCATCACAGCTGGAGCCCCTTGAGCATCC
ACCTCCCCAGGAGACTCTGGAGCCTCGGGTGCCCCAGGAGCCCCTGGACCCCTCAGATGCCGAGGAGTTT
CTAGAACTCTCAGTACCTGAAGAGTCCCTAGAGGGCCTGATAGTTGCGAGAACAGGAACAGAACAGGCCC
AGTGTGAATTAGAGGCTACAACTTTGCCCCTAGAGTACCCTTTGGCCTTCAGTGAGGATTTTCAGAAACT
CTCTGAGTTTTTAGTTCAGTTGACCAGTTACCTGAGAAGCAGAGGGTATCCCACTGAAGCGGCTCTAGTG
AGCTTTGTTGGCAGCTTCTTCTCAGGTGAGGCGGGAAGGATGTTCCAGCCCTTATTAGATAGCCAACCCC
CCCTGGTGGAGCAATTTGAAAGGCTCCTGCGAGCGCTCCAAGATACTTTTGACAATCCAGAAAGCTTGGA
AGTTGCTAACCAGGGCCTCCCTCAACTTCGCCAAGGGGAAGGCCTTGCTCCCAGGTACTCAACCCGCTTC
CATCTCATTGCGCAAGAGTTAGATTTGGGTGAAAGCACGCTCTGCATCCAATTTCAAGAAGAGCTTGCCA
GTTCTATTCAAAATGAACTGTCTTGCACAAGTCCAGCCACCAACCTATCTGATGTGATCATTGAGTGTGT
CACCCTAGAAGAGAAGGCAAGTGGCGGGGTTGATTCCAGTTCATCATCGTCTGAAGAGGAAAATGGGTCC
GAGGGTCCTCCCACTGAAAACCAACCTGTTCAAGCTACAAGTAATCGCCCCCACCTCAGCGAGGCTGAAC
GGGCAAGACGCCGCGAAGGCCACTTGTGCCTCTACTGTGGCCATCCAGGTCATTTTGCCAGAGACTGCCC
TGTCAAGCCTCATCGTGTCCAGCAGGCGGGAAACATGGAGGCCCGGCGGTAA

Translation (553 aa):
MVEDLAASYVTLKLENEILQAQVKRLMEENAALQAQIPELQKSGAVKEHEPLRKPSEAQEPPESPEFPAA
RESQNPWEPPATTEPGEPTKIREPREPSAISELREPPEIKEPQEPPETNESGESSAITEFRGSPEIKEPH
LPPKSKEYWGPQELPMVKESWEPPEALDSTAWKPPAVKESQEIQKALESPATQRPQASPRGYDLPAVCEA
EPTDNQGTPALKELQSPQLHNPTNDEESQTVPEYQETSSQLEPLEHPPPQETLEPRVPQEPLDPSDAEEF
LELSVPEESLEGLIVARTGTEQAQCELEATTLPLEYPLAFSEDFQKLSEFLVQLTSYLRSRGYPTEAALV
SFVGSFFSGEAGRMFQPLLDSQPPLVEQFERLLRALQDTFDNPESLEVANQGLPQLRQGEGLAPRYSTRF
HLIAQELDLGESTLCIQFQEELASSIQNELSCTSPATNLSDVIIECVTLEEKASGGVDSSSSSSEEENGS
EGPPTENQPVQATSNRPHLSEAERARRREGHLCLYCGHPGHFARDCPVKPHRVQQAGNMEARR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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