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Report for CCDS30228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30228.1 Public Mus musculus X Plxna3 23 108 98 CCDS HistoryNCBI Gene:18846Re-query CCDS DB by CCDS ID:30228.1Re-query CCDS DB by GeneID:18846See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004326.3 ENSMUSP00000004326.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004326.3Link to Ensembl Protein Viewer:ENSMUSP00000004326.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000004326Re-query CCDS DB by Protein ID:ENSMUSP00000004326
Original member Current member NCBI NM_008883.2 NP_032909.2 Accepted alive Link to Nucleotide Sequence:NM_008883.2Link to Protein Sequence:NP_032909.2Re-query CCDS DB by Nucleotide ID:NM_008883Re-query CCDS DB by Protein ID:NP_032909Link to BLAST:NP_032909.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032909.2 1872 P70208-1 1872 100% 0 0

Chromosomal Locations for CCDS 30228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74330996 74331592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74331967 74332506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74332968 74333150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74333547 74333675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74333746 74333846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74334225 74334348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74334432 74334588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74334673 74334772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74335043 74335157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74335298 74335498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74335770 74335866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74336001 74336191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74336277 74336422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74336492 74336612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74336719 74336855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74336972 74337142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74337406 74337499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74337581 74337820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74337911 74338054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74338134 74338368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74338459 74338601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74338690 74338946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74339070 74339136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74339242 74339388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74339466 74339625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74339775 74339878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74340065 74340161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74340431 74340621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74340843 74341012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74341536 74341748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74341921 74342071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74343447 74343542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5619 nt):
ATGCCCACTGTCTGCCTTCTCCCATTGCTATTCTTCACCATAGGAGGGTGCCTGGGTAGCAGCAGGCCAT
TTCGTACCTTTGTGGTAACAGATACCACTCTGACTCACCTGGCTGTGCACCGAGTGACTGGGGAGGTGTT
TGTAGGTGCCGTGAATCGAGTTTTCAAGCTGGCTCCAAACCTAACTGAGCTACGGGCCCATGTCACAGGG
CCCATTGAGGACAATGCTCGCTGCTACCCACCTCCTAGCATGCGTGTGTGCTCCCACCGCCTGGTGCCTG
TGGACAATGTGAACAAGCTGCTCCTCATAGACTATGCAGCCCGTCGTTTGGTAGCTTGTGGCAGCATCTG
GCAGGGCATCTGCCAGTTCCTGCGTCTGGATGACCTCTTCAAGTTGGGTGAGCCCCACCATCGCAAGGAG
CACTATCTGTCAGGGGCCCAGGAGCCTGATTCCATGGCTGGCGTCATTGTTGAACAGGTCCAGGGGCCTA
GCAAGTTGTTTGTGGGCACCGCTGTTGATGGCAAGTCTGAGTACTTTCCCACCTTGAGTTCCCGTAAGCT
CATCGACGATGAGGACAGTGGAGATATGTTCAGTCTGGTGTACCAGGATGAGTTTGTCTCTTCTCAGATC
AAGATCCCTTCAGACACATTGTCCTTGTACCCTGCCTTTGACATCTACTACATATATGGCTTTGTCAGTG
CCTCCTTCGTGTACTTCTTAACGTTGCAGCTGGACACCCAGCAGACGCTGTTGGATACAGCAGGCGAGAA
ATTCTTCACATCCAAGATCGTGCGCATGTGTGCAGGGGACTCAGAGTTCTACTCTTATGTAGAGTTCCCT
ATTGGCTGCTCCTGGCGTGGTGTGGAGTACCGCTTGGTGCAGAGTGCCCATCTGGCCAAGCCAGGCCTGC
TATTGGCCCAGGCTCTGGGTGTGCCAGCCGACGAGGATGTCCTCTTCACCATCTTCTCTCAGGGCCAGAA
GAACAGAGCCAACCCACCTCGGCAGACCATCCTTTGCCTTTTCACCCTCAGCAGCATTAATGCCCACATC
CGGCGCCGAATCCAATCGTGCTACCGTGGAGAGGGCACGCTGGCCCTACCCTGGCTACTGAATAAGGAGC
TGCCCTGCATCAACACCCCTCTGCAGATCAATGGAAACTTCTGTGGGTTAGTGTTGAATCAACCATTGGG
TGGCCTACACGTGATTGAGGGGCTACCCTTGCTGGCTGACAGCACTGATGGCATGGCCAGTGTGGCTGCC
TACACCTACCACCAGCATTCTGTGGTTTTCATCGGTACACGCAGCGGTAATTTGAAGAAGGTGCGGGTCG
ATGGCTCTCAGGATGCCCAGCTATATGAAACGGTCTCTGTGGTGCAGGGCAGCCCCATACTTCGAGACCT
GCTCTTCAGCCCTGACCACCGACACATCTACCTCCTGAGTGAGAAGCAGGTGAGCCAACTCCCGGTGGAG
ACCTGTGAGCAGTATCTGAGCTGTGCTGCATGCCTGGGCTCAGGGGACCCACACTGTGGTTGGTGTGTGC
TACAGCACAGGTGCTGCCGTGAAGGGGCCTGTCCAGGTGCCTCTGCCCCACATGGCTTTGCAGAAGAGCT
GAGCAAATGTATACAGGTGCGGGTCCGTCCCAATAATGTGTCAGTGACATCCTCTGGGGTGCAGCTGACC
GTAGCCATGCGCAACGTGCCAGACCTCAGTGTGGGTGTGAGCTGTTCCTTTGAGGAGGTGACTGAAAGTG
AGGCTATTCTGCTGCCCTCTGGAGAGTTACGATGTCCTTCACCATCCCTTCAGGAGCTCCAGACACTTAC
CAGAGGGCATGGGGCCACTCATACTGTGCGGCTTCAGCTGCTCTCCATGGAGACTGGTGTGAGGTTTGCT
GGGGTTGACTTTGTCTTCTACAACTGCAGTGCCCTCCAGTCGTGTATGTCCTGTGTTGGCAGCCCTTACC
CCTGCCACTGGTGTAAGTACCGTCATGTGTGTACCAGCCACCCACACGAGTGCTCTTTCCAGGAGGGCAG
GGTCCACAGCCCTGAGGGCTGCCCTGAGATCCTGCCTCAAGGGGACCTCTTGATTCCTGTGGGTGTCATG
CAGCCTCTAACTCTGCGGGCTAAGAACCTGCCACAGCCTCAGTCCGGACAGAAGAATTATGAATGCGTGG
TCCGTGTACAGGGACGGCAACATCGGGTACCTGCAGTGCGCTTTAACAGCAGCAGTGTGCAGTGCCAGAA
TGCCTCGTACTTCTATGAAGGTGATGAGTTTGGTGACACCGAACTGGACTTCTCTGTGGTTTGGGATGGA
GATTTCCCCATTGATAAGCCTCCTAGCTTCCGAGCCCTTCTTTACAAGTGCTGGGCTCAGCGGCCTAGCT
GTGGCCTCTGCCTCAAGGCTGATCCCCGATTCAACTGTGGCTGGTGCATCTCAGAGCACAGGTGCCAGCT
GAGGGCTCACTGCCCAGCTCCCAAAAGTAACTGGATGCACCCAAGCCAGAAGGGTGCCCGATGCAGCCAT
CCCCGAATCACCCAGATTCATCCACTTACAGGACCCAAGGAGGGTGGCACCCGGGTCACCATTGTGGGTG
AGAACCTGGGCCTCACTTCCCGTGAGGTTGGCCTTCGAGTAGCTGGTGTACGTTGCAACTCCATTCCCAC
CGAATATGTCAGTGCTGAAAGGATCGTATGTGAGATGGAGGAATCGCTGGTGCCCAGCCCACCACCTGGG
CCTGCTGAGCTCTGTGTAGGGGATTGTTCTGCTGACTTCCGCACACAGTCCCAGCAACTCTACAGCTTTG
TGACCCCTACATTTGACCGTGTGAGTCCCTCTCGGGGCCCAGCTTCTGGAGGCACTCGGCTTACCATCTC
TGGAATTTCTCTGGATGCCGGCAGCAGGGTCACAGTGATTATAAGAGATGGCGAGTGCCAGTTTGTGAGG
AGAGATGCCGAGGCAATCGTGTGTATCTCACCTGTCTCCACCCTGGGCCCCAGTCAGAGCCCTATCACCC
TTGCCATCGATCATGCCAACATCTCCAACACTGGAGTCATCTATACCTACACCCAGGACCCTACGGTCAC
ACACCTTGAGCCCACCTGGAGCATCATCAATGGAAGCACCTCCATCACTGTGAGTGGAACCCATCTGCTG
ACAGTTCAAGAACCCCGTGTACGAGCCAAGTACCGTGGTATTGAGACCACTAACACATGCCAGGTGATCA
ACGACACTGCAATGCTATGTAAGGCCCCTGGCATCTTCCTTGGGCACCCTCAGCCTCGGGCCCAAGGCGA
GCACCCTGACGAGTTTGGCTTCTTGCTGGACCACGTGCAGGCAGCCCGCTCCCTCAACCGTTCTTCCTTC
ACCTACTACCCTGATCCCAGCTTTGAACCACTTGGGCCCTCTGGTGTGCTAGATGTCAAACCTGGTTCAC
ATGTTGTATTGAAGGGCAAGAACCTGATCCCTGCTGCAGCTGGCAGCTCCCGCCTCAACTACACAGTGTT
GATTGGAGGACAGCCATGTGCACTAACTGTCTCAGATACTCAACTTCTGTGTGATTCCCCAAGCCAGACA
GGCCGGCAGCCTGTTATGGTGCTGGTGGGTGGCCTGGAGTTCTGGTTGGGCACGCTGCACATCACTGCTG
ATCGGGCACTGACCTTACCAGCTATGGTGGGGCTAGCAGCAGGGGGCGGGCTCTTGCTGCTGGCCATCAC
TGTTGTGCTGGTCGCCTACAAGCGTAAGACTCAGGATGCAGACCGCACACTTAAGCGGCTTCAGCTACAA
ATGGACAACCTGGAGTCTCGTGTGGCCTTGGAGTGCAAGGAAGCCTTTGCTGAGCTGCAGACTGATATCA
ATGAACTGACAAACCACATGGATGGTGTCCAGATCCCCTTCTTGGACTACCGGACCTATGCTGTGCGCGT
GCTTTTCCCTGGCATCGAGGCTCACCCAGTGCTCAAGGAGCTGGATACTCCCCCCAATGTGGAGAAGGCC
CTGCGTCTATTTGGACAGTTGCTGCACAGCCGTGCCTTCCTGCTCACCTTTATCCACACTTTGGAGGCCC
AGAGTAGTTTCTCCATGCGTGACCGTGGTACTGTGGCCTCACTCACCATGGTGGCCCTGCAGAGCCGGCT
TGACTATGCCACTGGGCTGCTCAAGCAACTGCTGGCTGACCTCATAGAGAAAAACCTTGAGAGCAAGAAC
CACCCAAAGCTGCTATTGCGCAGGACAGAGTCGGTGGCTGAGAAGATGCTCACCAACTGGTTCACATTCC
TGCTGCATAAGTTCCTGAAGGAGTGCGCCGGGGAGCCACTCTTCCTGCTGTACTGCGCCATCAAGCAGCA
GATGGAGAAAGGTCCTATTGATGCCATAACAGGCGAGGCCCGCTACTCCTTAAGTGAGGACAAGCTCATC
CGGCAGCAGATCGACTATAAGACCCTGACTCTGCATTGTGTGTGCCCGGAGAGCGAGGGCAGTGCCCAGG
TCCCTGTGAAGGTTCTTAACTGTGATAGCATCACCCAGGCCAAAGACAAGCTGTTGGATACTGTGTACAA
GGGTATTCCATACTCTCAGCGCCCCAAAGCTGAGGACATGGATTTGGAATGGCGCCAGGGCCGCATGGCC
CGAATCATCCTCCAAGATGAGGACATCACTACAAAGATTGAGTGTGACTGGAAGAGGGTCAACTCATTGG
CCCACTACCAGGTGACTGATGGTTCTTTAGTAGCACTGGTGCCCAAACAAGTGTCTGCCTATAACATGGC
CAACTCGTTCACCTTCACCCGGTCACTTAGTCGCTACGAGAGCTTGCTCCGTGCTGCCAGCAGCCCGGAT
AGCCTCCGTTCCCGAGCACCTATGCTCACGCCTGACCAGGAGGCAGGTACCAAGCTGTGGCACCTGGTGA
GGAACCACGACCACACTGATCACCGAGAAGGAGACCGCGGCAGCAAGATGGTCTCAGAAATATATCTCAC
AAGGCTGCTGGCCACCAAGGGCACGTTGCAGAAGTTTGTAGATGACTTGTTTGAAACTGTGTTCAGTACA
GCCCACCGGGGCTCAGCCTTACCCTTGGCCATCAAGTACATGTTTGACTTCCTGGATGAACAGGCTGACC
AGCGCCAGATCAGTGACCCTGATGTGCGTCACACCTGGAAGAGCAACTGCTTACCTCTGCGTTTCTGGGT
GAATGTGATCAAGAATCCGCAATTTGTGTTTGACATCCATAAGAATAGCATCACAGACGCCTGTTTGTCA
GTGGTGGCCCAGACCTTCATGGACTCCTGTTCTACATCAGAGCACCGCCTGGGCAAGGACTCACCTTCCA
ACAAGCTCCTCTATGCCAAGGATATTCCCAATTACAAGAGCTGGGTGGAGAGGTACTATCGAGATATCGC
AAAGATGGCATCCATCAGTGACCAGGACATGGACGCCTACTTAGTGGAGCAGTCCCGCCTCCATGCTAAT
GACTTCAATGTCCTAAGTGCACTCAGCGAGCTCTACTTCTATGTCACCAAGTACCGTCAGGAGATCCTCA
CCTCGCTGGACCGAGATGCCTCTTGTCGGAAGCACAAGCTTCGACAGAAGCTGGAGCAGATCATCACCCT
GGTGTCCAGCAGCAGCTGA

Translation (1872 aa):
MPTVCLLPLLFFTIGGCLGSSRPFRTFVVTDTTLTHLAVHRVTGEVFVGAVNRVFKLAPNLTELRAHVTG
PIEDNARCYPPPSMRVCSHRLVPVDNVNKLLLIDYAARRLVACGSIWQGICQFLRLDDLFKLGEPHHRKE
HYLSGAQEPDSMAGVIVEQVQGPSKLFVGTAVDGKSEYFPTLSSRKLIDDEDSGDMFSLVYQDEFVSSQI
KIPSDTLSLYPAFDIYYIYGFVSASFVYFLTLQLDTQQTLLDTAGEKFFTSKIVRMCAGDSEFYSYVEFP
IGCSWRGVEYRLVQSAHLAKPGLLLAQALGVPADEDVLFTIFSQGQKNRANPPRQTILCLFTLSSINAHI
RRRIQSCYRGEGTLALPWLLNKELPCINTPLQINGNFCGLVLNQPLGGLHVIEGLPLLADSTDGMASVAA
YTYHQHSVVFIGTRSGNLKKVRVDGSQDAQLYETVSVVQGSPILRDLLFSPDHRHIYLLSEKQVSQLPVE
TCEQYLSCAACLGSGDPHCGWCVLQHRCCREGACPGASAPHGFAEELSKCIQVRVRPNNVSVTSSGVQLT
VAMRNVPDLSVGVSCSFEEVTESEAILLPSGELRCPSPSLQELQTLTRGHGATHTVRLQLLSMETGVRFA
GVDFVFYNCSALQSCMSCVGSPYPCHWCKYRHVCTSHPHECSFQEGRVHSPEGCPEILPQGDLLIPVGVM
QPLTLRAKNLPQPQSGQKNYECVVRVQGRQHRVPAVRFNSSSVQCQNASYFYEGDEFGDTELDFSVVWDG
DFPIDKPPSFRALLYKCWAQRPSCGLCLKADPRFNCGWCISEHRCQLRAHCPAPKSNWMHPSQKGARCSH
PRITQIHPLTGPKEGGTRVTIVGENLGLTSREVGLRVAGVRCNSIPTEYVSAERIVCEMEESLVPSPPPG
PAELCVGDCSADFRTQSQQLYSFVTPTFDRVSPSRGPASGGTRLTISGISLDAGSRVTVIIRDGECQFVR
RDAEAIVCISPVSTLGPSQSPITLAIDHANISNTGVIYTYTQDPTVTHLEPTWSIINGSTSITVSGTHLL
TVQEPRVRAKYRGIETTNTCQVINDTAMLCKAPGIFLGHPQPRAQGEHPDEFGFLLDHVQAARSLNRSSF
TYYPDPSFEPLGPSGVLDVKPGSHVVLKGKNLIPAAAGSSRLNYTVLIGGQPCALTVSDTQLLCDSPSQT
GRQPVMVLVGGLEFWLGTLHITADRALTLPAMVGLAAGGGLLLLAITVVLVAYKRKTQDADRTLKRLQLQ
MDNLESRVALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVRVLFPGIEAHPVLKELDTPPNVEKA
LRLFGQLLHSRAFLLTFIHTLEAQSSFSMRDRGTVASLTMVALQSRLDYATGLLKQLLADLIEKNLESKN
HPKLLLRRTESVAEKMLTNWFTFLLHKFLKECAGEPLFLLYCAIKQQMEKGPIDAITGEARYSLSEDKLI
RQQIDYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMA
RIILQDEDITTKIECDWKRVNSLAHYQVTDGSLVALVPKQVSAYNMANSFTFTRSLSRYESLLRAASSPD
SLRSRAPMLTPDQEAGTKLWHLVRNHDHTDHREGDRGSKMVSEIYLTRLLATKGTLQKFVDDLFETVFST
AHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRFWVNVIKNPQFVFDIHKNSITDACLS
VVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPNYKSWVERYYRDIAKMASISDQDMDAYLVEQSRLHAN
DFNVLSALSELYFYVTKYRQEILTSLDRDASCRKHKLRQKLEQIITLVSSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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