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Report for CCDS30204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30204.1 Public Mus musculus X Bgn 23 108 98 CCDS HistoryNCBI Gene:12111Re-query CCDS DB by CCDS ID:30204.1Re-query CCDS DB by GeneID:12111See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033741.14 ENSMUSP00000033741.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033741.14Link to Ensembl Protein Viewer:ENSMUSP00000033741.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033741Re-query CCDS DB by Protein ID:ENSMUSP00000033741
Original member Current member EBI ENSMUST00000169489.1 ENSMUSP00000126768.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169489.1Link to Ensembl Protein Viewer:ENSMUSP00000126768.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169489Re-query CCDS DB by Protein ID:ENSMUSP00000126768
Original member Current member NCBI NM_007542.5 NP_031568.2 Accepted alive Link to Nucleotide Sequence:NM_007542.5Link to Protein Sequence:NP_031568.2Re-query CCDS DB by Nucleotide ID:NM_007542Re-query CCDS DB by Protein ID:NP_031568Link to BLAST:NP_031568.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031568.2 369 P28653 369 100% 0 0

Chromosomal Locations for CCDS 30204.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73490790 73491030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73491318 73491430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73491948 73492161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73492723 73492833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73492963 73493056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73493200 73493338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73494599 73494796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGTGTCCCCTGTGGCTACTCACCTTGCTGCTGGCCCTGAGCCAGGCCTTGCCCTTTGAGCAGAAGGGTT
TCTGGGACTTCACCTTGGATGATGGGCTGCTCATGATGAATGATGAGGAGGCTTCAGGTTCAGACACCAC
TTCAGGTGTCCCCGACCTGGACTCTGTCACACCTACCTTCAGTGCCATGTGTCCTTTCGGTTGCCACTGC
CACCTGCGGGTTGTTCAGTGCTCTGACTTGGGTCTGAAGACTGTGCCCAAGGAGATCTCACCTGACACCA
CACTGCTAGACCTGCAGAACAATGACATTTCTGAGCTTCGCAAGGATGACTTCAAAGGCCTCCAGCACCT
CTACGCCCTGGTCTTGGTAAACAATAAGATCTCCAAGATCCATGAGAAGGCCTTTAGCCCTCTGCGGAAG
CTGCAAAAACTCTACATCTCCAAGAACCACCTGGTGGAGATTCCTCCCAACCTGCCCAGCTCCCTGGTAG
AACTACGAATCCATGACAACCGTATCCGCAAAGTGCCCAAGGGCGTGTTCAGCGGGCTCCGGAACATGAA
CTGCATTGAGATGGGCGGGAATCCCCTGGAGAACAGTGGCTTTGAACCAGGAGCCTTTGATGGCCTGAAG
CTCAATTACCTGCGCATCTCAGAGGCCAAGCTCACTGGCATCCCCAAAGATCTCCCTGAGACCCTGAACG
AACTTCACCTGGACCACAACAAAATCCAGGCTATTGAGTTGGAGGACCTACTTCGATACTCCAAGCTGTA
CAGGTTGGGCTTAGGTCACAATCAGATTCGGATGATTGAGAATGGGAGCCTGAGTTTTCTGCCTACCCTG
AGGGAACTTCACTTGGACAACAACAAGCTGTCCCGGGTGCCTGCTGGCCTCCCAGATCTCAAGCTCCTCC
AGGTTGTCTATCTGCACTCCAACAACATCACCAAGGTGGGCATCAATGACTTCTGTCCTATGGGCTTCGG
AGTCAAGAGGGCCTACTATAATGGCATCAGCCTCTTCAACAACCCTGTGCCCTACTGGGAAGTGCAGCCT
GCCACCTTCCGCTGCGTTACTGACCGCCTGGCCATCCAATTTGGAAATTATAAGAAGTAG

Translation (369 aa):
MCPLWLLTLLLALSQALPFEQKGFWDFTLDDGLLMMNDEEASGSDTTSGVPDLDSVTPTFSAMCPFGCHC
HLRVVQCSDLGLKTVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK
LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK
LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL
RELHLDNNKLSRVPAGLPDLKLLQVVYLHSNNITKVGINDFCPMGFGVKRAYYNGISLFNNPVPYWEVQP
ATFRCVTDRLAIQFGNYKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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