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Report for CCDS30145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30145.1 Public Mus musculus X Ints6l 23 108 98 CCDS HistoryNCBI Gene:236790Re-query CCDS DB by CCDS ID:30145.1Re-query CCDS DB by GeneID:236790See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039374.8 ENSMUSP00000035379.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039374.8Link to Ensembl Protein Viewer:ENSMUSP00000035379.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000039374Re-query CCDS DB by Protein ID:ENSMUSP00000035379
Original member Current member EBI ENSMUST00000132428.7 ENSMUSP00000138630.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132428.7Link to Ensembl Protein Viewer:ENSMUSP00000138630.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132428Re-query CCDS DB by Protein ID:ENSMUSP00000138630
Original member Current member EBI ENSMUST00000186445.6 ENSMUSP00000139507.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186445.6Link to Ensembl Protein Viewer:ENSMUSP00000139507.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186445Re-query CCDS DB by Protein ID:ENSMUSP00000139507
Original member NCBI NM_172779.4 NP_766367.1 Updated not alive Link to Nucleotide Sequence:NM_172779.4Link to Protein Sequence:NP_766367.1Re-query CCDS DB by Nucleotide ID:NM_172779Re-query CCDS DB by Protein ID:NP_766367
Current member NCBI NM_172779.5 NP_766367.1 Accepted alive Link to Nucleotide Sequence:NM_172779.5Link to Protein Sequence:NP_766367.1Re-query CCDS DB by Nucleotide ID:NM_172779Re-query CCDS DB by Protein ID:NP_766367Link to BLAST:NP_766367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766367.1 861 Q8BND4 861 100% 0 0

Chromosomal Locations for CCDS 30145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 56455206 56455316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56455449 56455526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56479630 56479779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56480571 56480660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56480890 56481073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56481326 56481454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56483779 56483942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56485239 56485391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56489006 56489138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56493039 56493133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56496516 56496734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56497861 56497984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56499568 56499710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56501661 56501895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56504725 56505099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56506373 56506466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56506880 56506988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGCCCATCCTGCTGTTCCTCATAGATACGTCCGCCTCCATGAACCAGCGCACTGACCTGGGCACCTCCT
ATTTGGACATTGCTAAAGGCGCTGTGGAGTTATTCTTGAAGCTGCGCGCCCGGGACCCAGCCAGCCGCGG
AGACAGGTACATGCTGGTCACCTACGATGAGCCTCCCTACTGCATCAAGGCTGGTTGGAAGGAAAATCAC
GCCACATTCATGAATGAACTGAAAAATCTCCAGGCTTCTGGACTGACTACTCTTGGTCAGGCTCTAAGAT
CCTCCTTTGATTTGTTAAATCTCAATAGATTAATATCTGGAATAGACAATTATGGACAGGGGAGAAATCC
ATTTTTTTTAGAGCCGTCTATTTTAATTACCATCACAGATGGAAACAAGTTAACAAGTACTGCTAGCGTT
CAAGAAGAGCTTCATCTTCCTTTGAATTCTCCTCTGCCTGGAAGTGAACTAACCAAAGAACCTTTTCGTT
GGGATCAAAGGTTATTTGCCCTGGTGTTGCGTTTGCCTGGAGTGGCTTCTACTGAGCCAGAGCAGCTAGG
GAGTGTCCCAAGTGATGAATCAGCCATCACACAGATGTGCGAGGTCACAGGAGGTCGCTCCTACTGTGTG
AGAACACAAAGAATGTTAAATCAGTGTTTAGAGTCACTAGTTCAAAAAGTACAGAGTGGTGTAGTTATTA
ATTTTGAGAAAACAGGACCGGATCCACTTCCTGTTGGAGAAGACACACTGATGGAGTTGTGCAGGCCAAG
CAACCTATTTGCTGCTCAACCGTGGCATAGTTGTCATAAACTCATCTATGTGCGACCTAATTCTAAAACT
GGTGTTCCTGTTGGACACTGGCCAATTCCAGAATCGTTTTGGCCAGAACAGAATTTACCTTCACTACCTC
CACGAACATCACATCCTGTTGTGAGGTTTTCCTGTGTTGATTGTGAACCAATGGTTATAGACAAACTTCC
CTTTGACAAATATGAACTTGAACCGTCTCCCTTAACTCAGTATATCTTGGAAAGAAAATCTCCTCATACT
TGCTGGCAGGTGTTTGTTACCAGCAGTTCAAAATATAATGAGCTTGGATATCCATTTGGTTATTTGAAAG
CGAGTACTACTTTAACTTGTGTAAACCTCTTTGTGATGCCTTACAACTACCCAGTCTTACTTCCTCTTTT
AGATGACTTGTTTAAAGTGCACAAGCTTAAGCCAAATCTGAAGTGGCGACAGGCTTTTGACAGCTACTTA
AAAACTCTGCCTCCATACTACTTAATAACCAAGCTAGAGTCAGACCAAATTCTAGCATCAGTGGGGAAGA
AACCTCCCCAGGAAATTGGTATCAAAGTGAAAAACCATTCTGCATGTGGCCTACCCTTGGCTCACAATAA
AAGTTTTAGGAAACTGTTAAAAGAAATCATAGGGGAAAGTGCACCAAGGCTCACAGAACTGAATCCCAAA
GAGTTTGCTGGCTTCCAAGTGGGGCTCTTAAACAAGGATTTGAAACCTCAGACATATAGGAACGCTTATG
ATATCCCACGTAGAGGACTTTTGGACCAGTTGACCAGAATGAGATCCAATCTGCTGCAGACTCGGAAGTT
TATTGTTGGCCAAGATGAAGATTCACTTCATAGTGTCCCAGTTGCACAAATGGGTAACTATCAGGAATAT
CTAAAGATGCTGGCTTCTCCACTACGAGAGCTCGATCCAGATCAGCCAAAACGACTGCATACTTTTGGCA
ATCCATTTAAGCAAGATAAGAAGGGAATGATGATCGATGAAGCAGATGAGTTTGTAGTAGGGCCACAAAA
CAAAGTGAAACGTCCTGGAGAACCCAACAGTCCTATGTCATCTAAGCGAAGGCGGAGTATGTCCCTGCTG
TTGAGGAGAGCACAGACAGCACCTACTGTAACTAACCATGTGGGCGGGAAGGGACCACTCTCAGCCTCGT
GGTTCCCATCTTGTCCAAGCCTCGTAAAACACACCTTTGGACATCCAGACACCACTGTCATTCATGATAC
CCATGAAGAGAAGATGGAAAATGGGCAAAGCCCACCTGATGGCTTCTTATTAAAATCTGCTCCAGCAGAG
TTTATGAATGTGTCAGGAGAAAGCTTTATATCCAGCCAGTTGGATTCTCTATCTGACGACTTTACTGGTC
TCAGGAAAGATGGATTCATTCACAAACCTGGTAATAATATACTTCTAGGAGGAGCCAAAACCTGCAGTCT
TTCTGTAGCTGACCAAAAAATCACAATGGCATCTGCTTTGGAAACGGTGCCAAATTCAATGCAAATCACT
CCTGCAATGGCTCAAGGCATCAATGCTGACATAAAGCATCAATTAATGAAGGAAGTTCGAAAGTTTGGAC
GAAAGTATGAAAGGATTTTCATTTTGCTTGAAGAAGTGCAGGGACCTCTAGAGACGAAGAAACAGTTTGT
TGAATTTACCATCAAGGAAGCTGCAAGGTTTAAAAGAAGAGTCTTAATTCAGTACCTTGAGAAGGTACTA
GAAAAAATCGATTCCCACCACCTTCTTAACAATGTGAATCACATCAACAGCAGATCATCATGTTAA

Translation (861 aa):
MPILLFLIDTSASMNQRTDLGTSYLDIAKGAVELFLKLRARDPASRGDRYMLVTYDEPPYCIKAGWKENH
ATFMNELKNLQASGLTTLGQALRSSFDLLNLNRLISGIDNYGQGRNPFFLEPSILITITDGNKLTSTASV
QEELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGVASTEPEQLGSVPSDESAITQMCEVTGGRSYCV
RTQRMLNQCLESLVQKVQSGVVINFEKTGPDPLPVGEDTLMELCRPSNLFAAQPWHSCHKLIYVRPNSKT
GVPVGHWPIPESFWPEQNLPSLPPRTSHPVVRFSCVDCEPMVIDKLPFDKYELEPSPLTQYILERKSPHT
CWQVFVTSSSKYNELGYPFGYLKASTTLTCVNLFVMPYNYPVLLPLLDDLFKVHKLKPNLKWRQAFDSYL
KTLPPYYLITKLESDQILASVGKKPPQEIGIKVKNHSACGLPLAHNKSFRKLLKEIIGESAPRLTELNPK
EFAGFQVGLLNKDLKPQTYRNAYDIPRRGLLDQLTRMRSNLLQTRKFIVGQDEDSLHSVPVAQMGNYQEY
LKMLASPLRELDPDQPKRLHTFGNPFKQDKKGMMIDEADEFVVGPQNKVKRPGEPNSPMSSKRRRSMSLL
LRRAQTAPTVTNHVGGKGPLSASWFPSCPSLVKHTFGHPDTTVIHDTHEEKMENGQSPPDGFLLKSAPAE
FMNVSGESFISSQLDSLSDDFTGLRKDGFIHKPGNNILLGGAKTCSLSVADQKITMASALETVPNSMQIT
PAMAQGINADIKHQLMKEVRKFGRKYERIFILLEEVQGPLETKKQFVEFTIKEAARFKRRVLIQYLEKVL
EKIDSHHLLNNVNHINSRSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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