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Report for CCDS30008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30008.1 Public Mus musculus X Xk 23 108 98 CCDS HistoryNCBI Gene:22439Re-query CCDS DB by CCDS ID:30008.1Re-query CCDS DB by GeneID:22439See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015486.6 ENSMUSP00000015486.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015486.6Link to Ensembl Protein Viewer:ENSMUSP00000015486.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000015486Re-query CCDS DB by Protein ID:ENSMUSP00000015486
Original member Current member NCBI NM_023500.2 NP_075989.1 Accepted alive Link to Nucleotide Sequence:NM_023500.2Link to Protein Sequence:NP_075989.1Re-query CCDS DB by Nucleotide ID:NM_023500Re-query CCDS DB by Protein ID:NP_075989Link to BLAST:NP_075989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075989.1 446 Q9QXY7 446 100% 0 0

Chromosomal Locations for CCDS 30008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9272990 9273234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9281997 9282259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9308917 9309749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGAAATTCCCGGCCTCGGTGATAGCGTCCGTGTTCCTGTTCGTGGCCGAGACGGCGGCGGCGCTCTACT
TGAGCAGCACCTACCGCTCCGCAGGGGACCGCATGTGGCAGGTGCTGACGCTGCTCTTCTCCTTGATGCC
CTGCGCCCTGGTGCAGTTCACGCTCCTCTTCGTCCACCGCGACCTCAGCCGCGATCGCCCACTGGCGCTG
CTCATGCACCTGCTCCAGCTCGGGCCCCTGTACAGGTGTTGTGAAGTCTTTTGTATCTACTGTCAGTCCG
ACCAGAATGAAGAACCTTATGTGAGCATCACTAAGAAACGACAGATGCCAAAAGATGGCCTTTCAGAGGA
GGTGGAGAAAGAGGTTGGCCAGGCAGAAGGCAAGCTGATTACCCACCGTTCTGCATTCAGCCGGGCATCA
GTGATACAGGCTTTCCTAGGCTCTGCCCCACAACTGACCCTACAACTGTATATAACTGTCTTGGAGCAGA
ACATCACTACTGGAAGATGCTTCATCATGACCTTGTCCCTGCTGTCTATTGTCTATGGCGCCTTACGTTG
CAACATCTTAGCCATCAAAATCAAGTATGATGAGTATGAGGTCAAAGTCAAACCCCTGGCTTATGTCTGT
ATCTTCCTCTGGAGAAGCTTTGAGATTGCCACCCGAGTCATCGTCCTGGTCCTCTTTACCTCTGTCCTGA
AGATCTGGGTGGTGGCAGTCATACTCGTCAACTTCTTCAGCTTCTTCTTATATCCCTGGATCGTTTTCTG
GTGCAGTGGCTCCCCATTCCCTGAGAACATAGAGAAGGCCCTAAGTAGGGTGGGTACCACCATCGTGCTC
TGCTTCCTCACTTTACTCTATGCCGGCATCAACATGTTCTGCTGGTCAGCTGTTCAGCTGAAAATCGACA
ATCCGGAGCTCATCAGCAAGTCCCAGAACTGGTACCGCCTGCTCATTTACTACATGACGAGATTCATCGA
GAACTCCGTCCTCCTGCTCCTGTGGTATTTTTTTAAAACTGACATATACATGTATGTGTGTGCGCCTCTG
TTGATCTTGCAGCTGCTTATTGGGTACTGCACTGGCATTCTCTTCATGCTTGTGTTCTATCAGTTTTTCC
ACCCTTGCAAAAAGCTCTTCTCCTCCAGTGTTTCGGAAAGCTTTAGGGCACTTCTCAGGTGTGCCTGTTG
GTCCTCCCTGAGGAGAAAATCCAGCGAGCCAGTAGGAAGGATAGACACAGACTTAAAGGCGTGCACAGAG
CAAGATGTAATGCCTACTACCAGTAAAGTGATCCCCGAGGCCACTGACATCTGGACTGCTGTTGATCTGT
GCTCTGCTTAA

Translation (446 aa):
MKFPASVIASVFLFVAETAAALYLSSTYRSAGDRMWQVLTLLFSLMPCALVQFTLLFVHRDLSRDRPLAL
LMHLLQLGPLYRCCEVFCIYCQSDQNEEPYVSITKKRQMPKDGLSEEVEKEVGQAEGKLITHRSAFSRAS
VIQAFLGSAPQLTLQLYITVLEQNITTGRCFIMTLSLLSIVYGALRCNILAIKIKYDEYEVKVKPLAYVC
IFLWRSFEIATRVIVLVLFTSVLKIWVVAVILVNFFSFFLYPWIVFWCSGSPFPENIEKALSRVGTTIVL
CFLTLLYAGINMFCWSAVQLKIDNPELISKSQNWYRLLIYYMTRFIENSVLLLLWYFFKTDIYMYVCAPL
LILQLLIGYCTGILFMLVFYQFFHPCKKLFSSSVSESFRALLRCACWSSLRRKSSEPVGRIDTDLKACTE
QDVMPTTSKVIPEATDIWTAVDLCSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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