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Report for CCDS29944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29944.1 Public Mus musculus 19 Prdx3 23 108 98 CCDS HistoryNCBI Gene:11757Re-query CCDS DB by CCDS ID:29944.1Re-query CCDS DB by GeneID:11757See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025961.6 ENSMUSP00000025961.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025961.6Link to Ensembl Protein Viewer:ENSMUSP00000025961.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025961Re-query CCDS DB by Protein ID:ENSMUSP00000025961
Original member Current member NCBI NM_007452.2 NP_031478.1 Accepted alive Link to Nucleotide Sequence:NM_007452.2Link to Protein Sequence:NP_031478.1Re-query CCDS DB by Nucleotide ID:NM_007452Re-query CCDS DB by Protein ID:NP_031478Link to BLAST:NP_031478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031478.1 257 P20108 257 100% 0 0

Chromosomal Locations for CCDS 29944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 60864666 60864719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60865166 60865331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60867516 60867619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60870004 60870139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60871420 60871561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60873128 60873263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60874432 60874467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCGGCAGCTGCGGGAAGGTTGCTCTGGTCCTCGGTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTA
TTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGC
CTCTGCCCAAGGAAAGTCAGCCTTTAGCACCAGTTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCG
CCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAA
AATACTTGGTGCTTTTCTTCTACCCTTTGGATTTCACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAG
TGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGT
CATCTTGCCTGGATCAACACACCAAGAAAGAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGG
ATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAGAGGTCT
CTTCATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTG
GAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACT
GGACACCAGAGTCCCCTACGATCAAGCCAAGTCCAACAGCTTCCAAAGAGTACTTTGAGAAGGTCCATCA
GTAG

Translation (257 aa):
MAAAAGRLLWSSVARHASAISRSISASTVLRPVASRRTCLTDILWSASAQGKSAFSTSSSFHTPAVTQHA
PYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFS
HLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSV
EETLRLVKAFQFVETHGEVCPANWTPESPTIKPSPTASKEYFEKVHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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