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Report for CCDS29821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29821.1 Public Mus musculus 19 Pi4k2a 23 108 98 CCDS HistoryNCBI Gene:84095Re-query CCDS DB by CCDS ID:29821.1Re-query CCDS DB by GeneID:84095See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066778.5 ENSMUSP00000069284.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066778.5Link to Ensembl Protein Viewer:ENSMUSP00000069284.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066778Re-query CCDS DB by Protein ID:ENSMUSP00000069284
Original member Current member EBI ENSMUST00000235932.1 ENSMUSP00000158574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235932.1Link to Ensembl Protein Viewer:ENSMUSP00000158574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235932Re-query CCDS DB by Protein ID:ENSMUSP00000158574
Original member Current member NCBI NM_145501.2 NP_663476.1 Accepted alive Link to Nucleotide Sequence:NM_145501.2Link to Protein Sequence:NP_663476.1Re-query CCDS DB by Nucleotide ID:NM_145501Re-query CCDS DB by Protein ID:NP_663476Link to BLAST:NP_663476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663476.1 479 Q2TBE6 479 100% 0 0

Chromosomal Locations for CCDS 29821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42090502 42090936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42100637 42100837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42104858 42104989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42105330 42105483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42113043 42113104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42115037 42115136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42115885 42116018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42116507 42116566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42119793 42119954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGACGAGACGAGCCCGCTAGTGTCCCCCGAGCGGGCCCAACCCCCGGAGTACACCTTCCCGTCGGGCT
CCGGAGCTCACTTTCCGCAAGTACCGGGGGGCGCGGTCCGCGTGGCGGCGGCGGCCGGCTCCGGCCCGTC
ACCGCCGTGCTCGCCCGGCCACGACCGGGAGCGGCAGCCCCTGCTGGACCGGGCCCGGGGCGCGGCGGCG
CAGGGCCAGACCCACACGGTGGCGGTGCAGGCCCAGGCCCTGGCCGCCCAAGCGGCCGTGGCGGCGCACG
CCGTTCAGACCCACCGCGAGCGGAACGACTTCCCGGAGGACCCCGAGTTCGAGGTGGTGGTGCGGCAGGC
CGAGGTTGCCATCGAGTGCAGCATCTATCCCGAGCGCATCTACCAGGGCTCCAGTGGAAGCTACTTCGTC
AAGGACTCTCAGGGGAGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACC
CTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAA
CCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGT
ACAAAGGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCA
AGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAGGT
CGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAA
CCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCA
TCCGCAACACTGACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTG
TCGGGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCT
TTCCCACTGAAGCATCCTGACTCCTGGAGGGCATATCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAG
TCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTT
GGAGGAGGACCTATATGAACTCTTCAAGAGAGATCCTGGCTTCGACAGGGGCCAGTTCCATAAGCAGATT
GCTGTCATGAGAGGCCAGATCCTAAATTTGACCCAGGCCCTGAAAGACAATAAGAGCCCCCTGCACCTCG
TCCAGATGCCACCTGTGATTGTCGAGACGGCCCGCTCTCACCAGCGGTCTGCAAGCGAATCCTACACACA
GAGCTTTCAGAGTCGGAAGCCCTTCTTTTCATGGTGGTAG

Translation (479 aa):
MDETSPLVSPERAQPPEYTFPSGSGAHFPQVPGGAVRVAAAAGSGPSPPCSPGHDRERQPLLDRARGAAA
QGQTHTVAVQAQALAAQAAVAAHAVQTHRERNDFPEDPEFEVVVRQAEVAIECSIYPERIYQGSSGSYFV
KDSQGRIVAVFKPKNEEPYGHLNPKWTKWLQKLCCPCCFGRDCLVLNQGYLSEAGASLVDQKLELNIVPR
TKVVYLASETFNYSAIDRVKSRGKRLALEKVPKVGQRFNRIGLPPKVGSFQLFVEGYKDADYWLRRFEAE
PLPENTNRQLLLQFERLVVLDYIIRNTDRGNDNWLIKYDCPMDNSSCRDTDWVMVREPVIKVAAIDNGLA
FPLKHPDSWRAYPFYWAWLPQAKVPFSQEIKDLILPKISDPNFIKDLEEDLYELFKRDPGFDRGQFHKQI
AVMRGQILNLTQALKDNKSPLHLVQMPPVIVETARSHQRSASESYTQSFQSRKPFFSWW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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